barSeed - Barley Seed Development Database

Probe CUST_17316_PI390587928

Source Contig U35_3500

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17316_PI390587928	Hv_44K_v2	CTCAAAAGTCTGACTGCTTGATGCCTTTTGACCCTGTTAACAAATTATCCCGGTAAAAAA	1960	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.131	2.406	1.209	0.553	0.165	0.147
Raw	477.352	539.839	250.759	181.225	20.355	18.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57806.1	864	9e-22	35 - 89	100	55 / 55	minus	ABC10655
MLOC	MLOC_57806.3	2578	3e-21	1 - 54	100	54 / 54	minus	ABC10655
JLOC1	JLOC1_37526.2	2860	5e-22	2712 - 2766	100	55 / 55	plus
JLOC1	JLOC1_37526.1	2628	5e-22	2480 - 2534	100	55 / 55	plus
Harvest35	U35_3500	2031	3e-25	1961 - 2020	100	60 / 60	plus

Contig Sequence (2031 bp)

>U35_3500 2031 Hv_44K_v2
GGTTCCACCTGCTGATCAAACTATAAAGGACTCGGTGGACTCGTATTTTCGAGCACTTCA
TCCTGACACATTCTACAAAGCAATGGTTGTGACAGACATCAAGAAGGCTGATAAAATTTT
CCAAGAGATTGAAGGTCACAAACAAAAAATTGCTCATGCTGAAGCTGTCTATGCAGAGTC
AAAAACAACAAATAGACCTGAGGGAACGAGGCCTACACATAGGACGGGATTCCTTGGCCT
TATCGGTAAAAAGGTTGACACGCTTGAGTATTGTAGTGAGAAGATTAAGGAATTGCTTCC
CAAACTGGAGGATGAACAGAAGAGCACCCTTAGTGATAAACAGCAACGGGCGGCCTTTGT
CTTCTTCAACAGCAGAGCTGCTGCAGCCTCTGCATCTCAGACTCTCCATGCCCAGATGTT
TGATGAATGGACAGTTACAGAAGCTCCTGAACCACGTGAGGTAATATGGACCAATCTTCC
AAAGAAAATATATGATAGGCAAACCAGACAGACTGTGGTCTACCTCATTGTCTTTGTCAC
CGTGGTTTTCTATATGATTCCTATTACTGCTATCTCTGCTGTTACAACGTTGCAAAAACT
GAGGGAGAAGCTGCCCTTTCTGAAGGTGGTTGTGGACCAACCTTTACTTACGACAGTCTT
ACAAGCTTACCTGCCGCAGATCGCCCTCATTGTTTTCCTTGCTCTGCTGCCCACTCTTCT
TATGCTCCTGTCAAAGTTAGAAGGAATTCCTTCACAGAGCCATCTAGTGAGGGCAGCATC
AGGAAAATATTTCTACTTCATCGTCTTCAATGTCTTTATCGGCTATGCAATTGGTTCCTC
ACTATTCAGTGCTTTGCAAGATGTTATCAACAACCCTCCTGGGATTTTTACGACTCTTGG
CGCCAGGCTTCCTGGAAATGCAACTTTCTTCCTCACATTCGTTGCACTGAAATTCTTTGT
TGGTTATGGGCTTGAGCTCTCTCGTTTGGTCCCTCTCATCATTTTCCACCTGAAAAGGAA
GTACCTATGCAAGACAGAGGATGAGGTGAGAGCGGCCTGGGCTCCAGGAGACCTGGGGTA
TAACACCAGGGTTCCAAATGATATGCTGATCGTGACAGTTGTGTTGTGCTACTCCGTCAT
CGCGCCTTTGATTTTGCCATTTGGCGTTGCTTACTTTGCTCTGGGTTGGCTTATCGCGAA
AAATCAGGTTTTGAGAGTTTATGTTCCTAGTTATGAGAGCAACGGGCGAATGTGGCCACA
CATGCACACGAGGATCATTGCAGCTCTAATGGTTTACCAGGCCACCATGATTGGTATCAT
CACCGCGAAGCGCTTCTACTATTCTACTATCCTCTTCCCACTCCTTGCAATAAGCTTAAT
CTTCGCCTACACTTGCCATACACGCTTCTATCCTGCATTCGCCAAAACCCCTCTTGAGGT
GGCAAGCCAGCAGCTGAAAGAGACGCCGAACATGAGCACCATTTACACCGCCTACATCCC
TCCTTGCCTCAAGCCGGAGAAGCTCGAAGATGTGGAAGTCTTCGAAGACGCTCAGTCACG
CACCACCTCCAGAGATCCGTCCTTTTAATGTAAGTAGTTGCATCCATCAAAACGCGTAAC
CATTAGAAGCACAAGGATGACCTAAGTATTGCCGTAAAAAAATCTGAATTGTAAACAAAA
GGATGACCCCGGCATTGCCTTCTAATTTCTGCAGGATATGTGATGAATGTCCACGTGCTC
AGGACGGCCTTTCCACCCTGTGAAGCTTCTGTTTCCAGTATAGGAAACTGATGTCATATT
GTCATGTCCCGTGTACATACATTCGCTGTTGCATGTTGAACAGTTATTGAAAGACGTCGT
CTTATATTTTAGGTCGTTGATGTGGATATTGTTGGGTGTTTAGATTCTTCTTTTTGCTAT
TATTGTGTGTAGACCATCTGCTGCCCTGGTGTGTAAAAATCTCAAAAGTCTGACTGCTTG
ATGCCTTTTGACCCTGTTAACAAATTATCCCGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g05570.1	732	protein\|ERD4 protein, putative, expressed
Brachypodium v1_2	Bradi1g58380.1	730
Arabidopsis v10	AT1G30360.1	724	\| Symbols: ERD4 \| Early-responsive to dehydration stress protein (ERD4) \| chr1:10715892-10718799 FORWARD LENGTH=724