barSeed - Barley Seed Development Database

Probe CUST_17315_PI390587928

Source Contig U35_3501

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17315_PI390587928	Hv_44K_v2	CCTGGTGTGTAAAAATCTCAAAAGTCTGACTGCTTGATGCCTTTTGACCCTGTTAACAAA	571	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.881	2.332	1.178	0.522	0.154	0.124
Raw	552.237	663.376	308.946	215.185	23.127	19.635

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57806.1	864	2e-24	46 - 105	100	60 / 60	minus	ABC10655
MLOC	MLOC_57806.3	2578	2e-24	11 - 70	100	60 / 60	minus	ABC10655
MLOC	MLOC_57806.2	2623	7e-23	2548 - 2607	98	59 / 60	plus	ABC10655
JLOC1	JLOC1_37526.2	2860	8e-25	2696 - 2755	100	60 / 60	plus
JLOC1	JLOC1_37526.1	2628	8e-25	2464 - 2523	100	60 / 60	plus
Harvest35	U35_3501	645	3e-25	572 - 631	100	60 / 60	plus
Harvest35	U35_3500	2031	3e-25	1945 - 2004	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_3501 645 Hv_44K_v2
GCACGAGGCACACATGCACACGAGGATCATTGCAGCTCTAATGGTTTACCAGGCCACCAT
GATTGGTATCATCACTGCGAAGGACTTCTACTATTCTACTATCCTCTTCCCACTCCTTGC
AATAAGCTTAATCTTCGCCTACACTTGCCATACACGCTTCTATCCTGCATTCGCCAAAAC
CCCTCTTGAGGTGGCAAGCCAGCAGCTGAAAGAGACGCCGAACATGAGCACCATTTACAC
CGCCTACATCCCTCCTTGCCTCAAGCCGGAGAAGCTCGAAGATGTGGAAGTCTTCGAAGA
CGCTCAGTCACGCACCACCTCCAGAGATCCGTCCTTTTAATGATATGTGATGAATGTCCA
CGTGCTCAGGACGGCCTTTCCACCCTGTGAAGCTTCTGTTTCCAGTATAGGAAACTGATG
TCATATTGTCATGTCCCGTGTACATACATTCGCTGTTGCATGTTGAACAGTTATTGAAAG
ACGTCGTCTTATATTTTAGGTCGTTGATGTGGATATTGTTGGGTGTTTAGATTCTTCTTT
TTGCTATTATTGTGTGTAGACCATCTGCTGCCCTGGTGTGTAAAAATCTCAAAAGTCTGA
CTGCTTGATGCCTTTTGACCCTGTTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g58380.1	730	3e-59
Arabidopsis v10	None