barSeed - Barley Seed Development Database

Probe CUST_17308_PI390587928

Source Contig U35_3508

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17308_PI390587928	Hv_44K_v2	CAAAACTAGCTATGCCATGATGTCAGTTTTCTTTTATAATTATAGCAAGACGATGCGAGT	1337	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.612	1.633	1.139	0.807	0.378	0.376
Raw	4188.590	6437.583	4049.720	4390.753	743.783	808.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57369.1	2294	2e-24	37 - 96	100	60 / 60	minus	ABC09215
JLOC1	JLOC1_37168.1	2336	8e-25	2187 - 2246	100	60 / 60	plus
Harvest35	U35_3508	1420	3e-25	1338 - 1397	100	60 / 60	plus

Contig Sequence (1420 bp)

>U35_3508 1420 Hv_44K_v2
GGTGGCTCCTGGAAAAATGAGAAGGAAGATAGTAAATCCACGCATCATCCTTTTGGATTG
CCCTGTTGAGTACAAAAAGGGAGAAAATCAGACAAATGCTGAGTTGATGAGTGAAGAAGA
TTGGAAGGTTTTGCTAGATATGGAGGAAGAATACATAAAGAACCTCTGTGTGCAAATTTT
GAAATTCAAGCCTGACCTGGTGATCACTGAGAAAGGACTCAGTGACATGGCTATGCATTA
TTTAAGCAAGGCTGGAGTTAGTGCAATCCGTAGACTTAGGAAGACAGATAACAACAGGAT
TGCTAAAGCCTGTGGTGCAGTTATAGTGAACAGGCCAGAGGAGCTTCAAGAATCAGATGT
GGGGACACGAGCTGGACTCTTTGAGGTTAAGAAGATCGGTGATGAATTCTTTTCCTTCAT
TATTGAATGCAAAGATCCTAAAGCATGCACTGTTCTATTGAGGGGAGCAAGCAAGGACAT
CTTGAACGAGGTGGAGAGGAACCTTCAGGATGCCATGTCTGTTGCAAGGAACATTTTGAA
AAATCCGAAACTTCTACCTGGAGGTGGTGCTTCTGAATTGACTGTATCGGCAACACTAAA
GCAGAAGAGTTCTTCAGTTGAAGGTGTTGAAAAGTGGCCTTATGAAGCTGCTGCTTTAGC
ATTTGAAGCAATCCCAAGAACTTTGCTTCAAAATTGTGGTTTGAATGTTATTAGGACGAT
GACACAGCTCCAGGGGAAGCATGCGAACGGTGAAAATCCTTGGGTTGGCGTTGATGGAAG
GACTGGTGATATTGTTGACATGAAGGAGCGGAAGATCTGGGATTCTTACAGCGTGAAGGC
ACAGACGTTCAAGACAGCTATTGAGTCAGCTTGCATGCTTCTAAGGATTGACGACATTGT
CAGTGGAATCAAGAAGAAGCAGGCTCCTGGCGCAGGTGCTCCCAAGCAACCTCAGATTGA
AACTGGTGAAGATGCAGACACTGAACAGATGATCCCAGAGTAGAGCTTTTTGTGCTGCTG
GAGTGAGCCTGCACCGGTGATGTTATGTACCAAAGCTAGGAAAAGGCGCCCGCGGAGCAG
AATGTTTTATTAACACGTGAAATGGCGTTCGTTGGTTGCATTTCTTGAATGTTTGATGGT
GGCCAGGCCTCCAGGGTCGTCTAGTATTAGTTTGGATTGTAGCATTTTCGTATGTTCGGA
TGATGAGGCGCATGTGGGGTTTCAGTTGTGTATTTGTATCGGCGTTTTGGGATCTGACTA
TTGCATGGATGGTTGCTGTTCGTTTTTGTTTTTGGACTTTGTAGTAGTGAACGGATATAG
GAACTTGAATTTAACAGCAAAACTAGCTATGCCATGATGTCAGTTTTCTTTTATAATTAT
AGCAAGACGATGCGAGTTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g34690.1	559	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi1g39090.1	559
Arabidopsis v10	AT5G26360.1	555	TCP-1/cpn60 chaperonin family protein \| chr5:9255561-9258891 REVERSE LENGTH=555