barSeed - Barley Seed Development Database

Probe CUST_17306_PI390587928

Source Contig U35_3510

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17306_PI390587928	Hv_44K_v2	TCTTCTCGGTGGAGGAAGGGCGGATTGAGTTCAGCTCCATTTCGCCTCGGAGTCAAGATG	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365540	1279	2e-24	20 - 79	100	60 / 60	plus	None
MLOC	AK248135.1	1212	2e-24	39 - 98	100	60 / 60	plus	None
MLOC	MLOC_18028.2	1534	2e-24	420 - 479	100	60 / 60	minus	ABC09716 ABC38951
MLOC	AK375253	3467	7e-23	1637 - 1693	100	57 / 57	plus	ABC09716 ABC38951
MLOC	AK357302	1767	7e-23	35 - 91	100	57 / 57	plus	ABC38951
MLOC	AK355290	2071	7e-23	108 - 164	100	57 / 57	plus	ABC38951
MLOC	MLOC_18028.1	2275	7e-23	1102 - 1158	100	57 / 57	minus	ABC09716 ABC38951
JLOC1	JLOC1_12459.1	1605	8e-25	1118 - 1177	100	60 / 60	plus
JLOC1	JLOC1_12460.1	1463	4e-23	290 - 346	100	57 / 57	minus
Harvest21	ABC17216	503	3e-25	99 - 158	100	60 / 60	plus
Harvest21	ABC38951	539	1e-23	344 - 400	100	57 / 57	minus	ABC38951
Harvest35	U35_3510	179	3e-25	14 - 73	100	60 / 60	plus
Harvest35	U35_42935	539	1e-23	344 - 400	100	57 / 57	minus

Contig Sequence (179 bp)

>U35_3510 179 Hv_44K_v2
CTCTTCTCATCTTTCTTCTCGGTGGAGGAAGGGCGGATTGAGTTCAGCTCCATTTCGCCT
CGGAGTCAAGATGGGGGACGTGGCCAAGGACCTTGCCGCCGGCACGGTGGGCGGGGCGGC
GCAACTGGTCGTGGGCCACCCGTTCTACACCATCAAGGTGAAGCTGCAGAGCCAGCCCA

Homology of Contig U35_3510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None