barSeed - Barley Seed Development Database

Probe CUST_17305_PI390587928

Source Contig U35_3511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17305_PI390587928	Hv_44K_v2	GTCCTGCCTCTGTAACAGAAAACCAAGACATGTGTGTGAATCGAACGAAATTTGCATTCC	1334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375253	3467	2e-24	3408 - 3467	100	60 / 60	plus	ABC09716 ABC38951
MLOC	AK357302	1767	2e-24	1708 - 1767	100	60 / 60	plus	ABC38951
MLOC	AK355290	2071	2e-24	1879 - 1938	100	60 / 60	plus	ABC38951
MLOC	AK365540	1279	2e-24	1128 - 1187	100	60 / 60	plus	None
MLOC	MLOC_39495.1	1078	2e-24	538 - 597	100	60 / 60	plus	None
JLOC1	JLOC1_25754.1	769	8e-25	538 - 597	100	60 / 60	plus
Harvest35	U35_3511	1414	3e-25	1335 - 1394	100	60 / 60	plus

Contig Sequence (1414 bp)

>U35_3511 1414 Hv_44K_v2
AATTTTTCTTTTCACGGAGTAGTTTAGGGTCGTTCCTCTGTGGTTTCACTCTTGCCTGCG
GTTTTCGCATAGAGATTCGTGTCTTCCAGTCAAGATGCTGCTGGCCTCTGTGGTTTGACG
GGATCTTTTCCGGTCAAGCGGTATCGTATAGGATGCCAACATTGACAGGCTGTTGAGCTG
TTCATGTTGTGTCTTATCTCCACTTAAACAAATCAGCAAAGCAAAGCATTGGGGAAAACT
GAGCGGGATCCATCCTCCCTAATCCAAATTGTTGTGAGAGCAGATGGGGGACGTGGCCAA
GGACCTTGCCGCCGGCACGGTGGGCGGGGCGGCGCAGCTGGTCGTGGGCCACCCGTTCGA
CACCATCAAGGTGAAGCTGCAGAGCCAGCCCACGCCGCCGCCCGGCCAGCCGCCCAAGTT
CGCCGGCGCCATGGACGCCGTCAAGCAGACCATCTCGGCCGAGGGGCCCCGGGGCCTATA
CAAGGGCATGGGCGCCCCGCTCGCCACCGTCGCCGCCTTCAACGCCGTGCTCTTCACCGT
CAGGGGACAGATGGAGGCCCTGCTGCGCTCCGAGCCCGGCGCCGCGCTCACCGTCGGCCA
GCAGGTCGTCGCCGGCGCCGGGGCCGGCGTCGCCGTCTCCTTCCTCGCCTGCCCCACCGA
GCTCATCAAGTGCAGGCTGCAGGCGCAGAGCGCGCTCGCCACCGCCGCTCCCGCCGCCGC
CGCCGCCGCTCCAGCCGCAGNCGGCGCGGCTGCCACCGTCACCGCCACGGCCAGTGCTGC
CGCGGTGAAGTACGGCGGGCCGCTGGACGTGGCGAGGCACGTGCTGCGGTCCGAGGGCGG
CGTGCGGGGCCTCTTCAAGGGCCTGGTCCCCACAATGGCGCGCGAGATCCCCGGCAACGC
GCTCATGTTCGGCGTCTACGAGGCCACCAAGCAGTACATGGCCGGCGGGCAGGACACGTC
AGGGCTGGGCAGGGGCTCCCTGATCCTCGCGGGCGGGGTCGCCGGCGCGGCGTTCTGGGG
GTCCGTGTACCCGACCGACGTGGTCAAGAGCGTGCTCCAGGTGGACGACTTCAAGAACCC
AAAGTACTCGGGCTCCATGGACGCGTTCAAGAAGATCCTCGCCGCCGACGGGGCCAGGGG
TCTGTACAGGGGGTTCGGGCCGGCCATGGCGCGCAGCGTCCCGGCCAACGGCGCCTGCTT
CCTCGCCTACGAGGTGACCAGGTCCCTGCTCTAGGCGACCAGCAAGCAGGCTGCTGGTTT
CTGCACATCCATCGCCATTCTTGACTTCGTTATTGTTCCTCCACCCTGATGATTCAGTTA
TCGTTGTTTGGACAGTCCTGCCTCTGTAACAGAAAACCAAGACATGTGTGTGAATCGAAC
GAAATTTGCATTCCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42299.5	317	3e-144	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g34077.1	316	2e-149
Arabidopsis v10	AT5G46800.1	300	1e-131	\| Symbols: BOU \| Mitochondrial substrate carrier family protein \| chr5:18988779-18989810 REVERSE LENGTH=300