barSeed - Barley Seed Development Database

Probe CUST_17302_PI390587928

Source Contig U35_2492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17302_PI390587928	Hv_44K_v2	CCATTTCTTTTATTCATGAAGTCTCGGCATGATAACATACCTAATCATGTCCATAAACGA	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70839.1	1363	2e-24	486 - 545	100	60 / 60	plus	ABC05852 ABC49696
MLOC	MLOC_70839.5	1313	2e-24	701 - 760	100	60 / 60	minus	ABC05852 ABC49696
MLOC	MLOC_70839.4	1397	2e-24	789 - 848	100	60 / 60	minus	ABC05852 ABC49696
Harvest21	ABC05851	523	3e-25	459 - 518	100	60 / 60	plus
Harvest35	U35_2492	523	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_2492 523 Hv_44K_v2
GCTTCGTCGTCGCGGAGCTCGAATCTTATCCCGCTTATTATCTGCATCCATGGCCGCGGC
CAGCTTCCTCCTCAGCCCCAGGGTGACGCTGCCCCTGCGCCGAGGATCCCGCCTCCTCGT
GTCCTGCTCCGCCTCTTCGTCGTCCTCCTCGTCAGGTGTCGGCTCCCTTCTTCGGTTCAG
CAAACGCAGCTGTATGCTGCTGGAGGGATGGGATTCCAGGGAAGGGTGGGGTTCTTGGGC
CTCGGGATCATGGGCGCCCCCATGGCATCAAACCTCATCAAGGCTGGTTGTGATATTACA
GTTTGGAACAGAACCAAGAGCAAGTGCGATCCTCTTCTCAGCCTCGGTGCCAAGTTCGAA
TCTTCGCCCGCCAGAGTTTCATCATCCTGTGATGTCACCTTTGCAATGCTTGCTGACCCA
GAAAGCGCGGTATAAGTTCCGTTTCAGCATTCCAATGGCCATTTCTTTTATTCATGAAGT
CTCGGCATGATAACATACCTAATCATGTCCATAAACGATTTGT

Homology of Contig U35_2492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None