barSeed - Barley Seed Development Database

Probe CUST_17292_PI390587928

Source Contig U35_17202

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17292_PI390587928	Hv_44K_v2	ATCAATAAGAACTCAGCTCAAGGAGGTTGATATCTCAGATTTTGTTGCCGGAAGGCCTGA	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56387.1	2275	2e-24	1476 - 1535	100	60 / 60	minus	ABC06736
MLOC	MLOC_56387.2	2171	2e-24	1420 - 1479	100	60 / 60	minus	ABC06736
JLOC1	JLOC1_36462.2	2163	8e-25	636 - 695	100	60 / 60	plus
JLOC1	JLOC1_36462.1	2136	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC06736	2146	3e-25	648 - 707	100	60 / 60	plus	ABC06736
Harvest35	U35_17202	875	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_17202 875 Hv_44K_v2
GCCGCCTCTGTCCCCTAGCCCGACGCCGACGCCGCCGCGGCCGTTCCCCCTCCTCGAGTA
AACGGTCGCCGCCGTCTGGATCCAAGGTTGTTGTGTGAAGTGCCACGTAACCACATGGCT
TCAGTGGTGCAAGATTTCCAGCCACGGACATTCTCCATCAAACTGTGGCCACCGAGTGAA
AGCACTCGTCTGATGCTTGTGGAGAGGATGACCAAGAACCTGTGCAATGAGTCAATCTTT
TCTCGCAAGTATGGCCTTTTGGGCAAAGAAGAGGCTCATGAGAATGCTAAAAGGATTGAA
GAGATGTGCTTTGCTTCTGCAGATGAGCATTTCAAGACGGTGCCTGATGGTGATGGGAGT
TCTGCAGTCCAGCTATATGCAAAAGAAACAAGCAAGCTGATGCTGGAAGTCCTGAAAAAA
GGTCCAAGGACGACTGCGGAACCAGAAGCGCCTGTTATTGATACACCTATGGAGCCTGCT
GATACTCTATTTGATATTTCTGGTGGCAAGCGTGCATTCATTGAGGCGGACGAAGCAAAG
GAACTTCTGAGCCCACTAATGAAACCAGGAAACTCGTATAGCAGGATTTGCTTGAGCAAC
AGGAGCTTTGGTATCGGTGCTGCCAATGTTGCTGGGCCAATTCTTGAATCAATAAGAACT
CAGCTCAAGGAGGTTGATATCTCAGATTTTGTTGCCGGAAGGCCTGAGGATGAAGCCCTT
GATGTGATGCGGATATTCTCCAAAGCTTTAGCAGGGTCTGTACTGAGATACCTGAACATC
TCTGACAATGCTTTAGGTGAGAAGGGTGTGAGGGCATTCACAGAGCTGCTAAAATCTCAG
GGCAACCTGGAAGAACTGTATGTGATGAACGATGG

Homology of Contig U35_17202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46560.1	545	2e-154	protein\|RAN GTPase-activating protein 1, putative, expressed
Brachypodium v1_2	Bradi3g36420.2	552	3e-158
Arabidopsis v10	AT5G19320.1	545	3e-102	\| Symbols: RANGAP2 \| RAN GTPase activating protein 2 \| chr5:6505310-6506947 REVERSE LENGTH=545