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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17291_PI390587928Hv_44K_v2TTTGGGAACCTATATCTATGCTCTGTCCTCTCTTTTTCGAAGCTGTGATATCTGTGTAAA2036GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1791.2421.1720.9090.2820.288
Raw 4078.6236839.3975518.2776860.393736.418812.162



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56387.122756e-2452 - 11010059 / 59minus ABC06736
MLOCMLOC_56387.221713e-211 - 5410054 / 54minus ABC06736
JLOC1JLOC1_36462.221633e-242061 - 211910059 / 59plus
JLOC1JLOC1_36462.121363e-242034 - 209210059 / 59plus
Harvest21ABC0673621463e-252073 - 213210060 / 60plusABC06736
Harvest35U35_1720321103e-252037 - 209610060 / 60plus



Contig Sequence (2110 bp)

>U35_17203 2110 Hv_44K_v2
CCGCCGCCTCTCGCCTCCAGTCTGCCGCCGCGATCGTTGTCCTTGAGTAGGTTGCTGTGT
GAAGTGCCACCTTTCCACATGGATTCAACTGCGCAAGATTTCCAACCCCGGACATTCACC
ATCAAACTGTGGCCACCGAGTGAAAGCACTCGTCTGATGCTTGTAGAGAGGATGACCAAG
AACCTATCCGACGAGTCCATCTTTTCTCGCAAGTATGGCATTTTGGGCAAAGAGGAGGCT
CATGAGAATGCTAAGAGGATCGAAGAAGTGTGCTTTGCTTCTGCAGATGAGCATTTCAAG
AAGGAGCCTGATGGTGATGGGAGTTCTGCTGTCCAGCTATATGCAAAAGAAACTAGCAAG
CTGATGCTTGAAGTCCTGAAAAAAGGCCCAAGGACAACCGCAGAACCAGAAGCACCTGTT
ATTGATGCACCTCTTGAGCCTGCTGCTACTGTGTTTGATATATCTGGTGGCAAGCGCGCT
TTCATTGAGGCAGAGGAAGCAAAGGAACTTCTCAGTCCACTAACAAAACCAGGAAACTCG
TATAAAAGGATTTGTTTCAGCAACAGGAGCTTTGGTATTGGTGCTGCCAATGTTGCTGGA
CCAATTCTTGAATCAATAAAATCGCAGCTCACAGAGGTAGATATCTCAGATTTTGTCGCT
GGAAGACCCGAGGACGAAGCCCTTGATGTGATGCGGATATTCTCCAAAGCTTTAGCAGGG
TCTGTACTGAGATACCTGAACATCTCTGACAATGCTTTAGGTGAGAAGGGTGTGAGGGCA
TTCACAGAGCTGCTAAAATCTCAGGGCAACCTGGAAGAACTGTATGTGATGAACGATGGC
ATATCAGGGGAAGCTGCAAAAGCTCTATCTGAGCTTATTCCTTCAACTGAGAAGCTTAAG
GTTCTTCACTTCCACAACAATATGACTGGTGATGAAGGTGCTATGTTCATTGCTGAGATG
GTTAAACGTTCTCCAAATCTTGAGAGCTTTAGGTGCTCAGCAACACGGATAGGATCTGAT
GGTGGAGTGGCATTGGCTGAGGCACTGGGGACATGTACTCGTCTGAAGAAGCTTGATATC
AGGGATAACTTATTTGGTGTCGAGGCAGGGGTGGCTCTCAGCGAAACCCTTCCAAAGCTT
GGTGATCTTGTTGAGCTGTACCTCAGCGACCTCAATCTTGAGAACGAGGGCACCATAGCA
ATTGTGAATGTCCTCAAGGAGTCGGCACCTCAGCTGGAGATCCTAGAGATGGCAGGAAAC
GAGATAACCGCCGACGCAGCCAAACCTTTGGCAGAATGCTTGACTGCAATGCAGTCGCTC
AAGAAGCTGACTCTGGCTGAGAATGAACTGAAGGATGCTGGGGCGGTGGCGGTTGCGAAA
TCTCTGCAAGAGGGCCACCCAGATTTGAAGGAGCTTGACGTGAGCACAAACCTGTTTCAG
AGGTCTGGAGCCCGCTGCTTTGCCCAGGCGGTGGCAAACAAGCCAGGCTTTTTGCTGCTG
AACATGAACGCGAACTACATCCCTGAGGAAGGCATTGACGAGGTGAGGAAGATCCTGAAG
GCAGGCGAGAACTCGGCGGACGTGCTTGGCCCGCTGGACGAGAACGAGCCCGAGGGGAAC
CCTGATGACGAGGATGAAGAGGAGGACGAAGATGACGAGGCAAAGTATGGGGACGGTAAC
GGGAAGGATGCTGGTCTCGGCTCGAAGCTGCAGGACTTGCAGGTGGAGGCGGAGGAGGAC
TAAAGCCCGCCAGTATCTTTTGCTCCGGTTTTAGCTTCTTCTGAAATGTTTTGCCGGATC
GGATGGAATTTGGCATGAAGAGAAGGAACTCCTAGCTGTGGCCGGCTCAACTGAATTTTG
AACCGAATCAAGCGGCCAGTTTGGTTTATCTGCAACTTTTCGGATGGAACTTTTGTTTCG
CGTTTTAGCACCGTCTTTGTTCTGTCAAAGTACTAGTCTGGTCAAGGTCAAGCCTGGACC
CTTTTAAAAATTTAAATCCATGGGATATTGGCACGGCATGTGTTTGCTGTGATATGTTTG
GGAACCTATATCTATGCTCTGTCCTCTCTTTTTCGAAGCTGTGATATCTGTGTAAAAAAA
AAAAAAAAAA



Homology of Contig U35_17203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g46560.15450.0protein|RAN GTPase-activating protein 1, putative, expressed
Brachypodium v1_2Bradi3g36420.25520.0
Arabidopsis v10AT5G19320.15450.0| Symbols: RANGAP2 | RAN GTPase activating protein 2 | chr5:6505310-6506947 REVERSE LENGTH=545