barSeed - Barley Seed Development Database

Probe CUST_17290_PI390587928

Source Contig U35_17204

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17290_PI390587928	Hv_44K_v2	TTTTCACATGAAGAGAGCTCACTGTGGCTCAATTGTTTTGAACTGAGCCAAGCGCAAGCA	664	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365616	2231	2e-24	2067 - 2126	100	60 / 60	plus	ABC06736 ABC06738
MLOC	AK360348	2168	2e-24	1965 - 2024	100	60 / 60	plus	ABC06736 ABC06738
MLOC	MLOC_53854.1	2124	2e-24	267 - 326	100	60 / 60	minus	ABC06736 ABC06738
MLOC	MLOC_53854.3	1875	2e-24	16 - 75	100	60 / 60	minus	ABC06736 ABC06738
MLOC	MLOC_53854.2	2120	2e-24	26 - 85	100	60 / 60	minus	ABC06736 ABC06738
JLOC1	JLOC1_34620.2	2433	8e-25	2036 - 2095	100	60 / 60	plus
JLOC1	JLOC1_34620.1	2430	8e-25	2033 - 2092	100	60 / 60	plus
Harvest21	ABC06738	737	3e-25	14 - 73	100	60 / 60	minus	ABC06738
Harvest35	U35_17204	737	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_17204 737 Hv_44K_v2
AGCTGTATCTCAGTGACCTCAATCTTGAGAACGAGGGGACAATAGCAATTGTGAATGTCG
TGAAGCAGTCAGCACCTCAGCTGGAGGTCCTTGAAATGGCAGGAAATGAAATAACCGCCA
AAGCAGCCAAGGCTGTAGCAGAATGCTTAACAGCAATGCAGTCGCTCAAGAAGCTGACCT
TGGCCGAGAATGAACTGAAGGATGCCGGGGCGGTGACAATTGCCAAATCTCTGCAGGAAG
GCCACCCAGGTCTGGAGGAGCTTGATGTGAGCACGAATCTGTTTCAGAGGTCTGGAGCCC
GGTGCTTTGCTCAAGCAGTCGCGAACAAGCCAGGTTTCGCATTGCTGAACATCAATTCGA
ATTTCATCTCCGACGAAGGGATAGACGAGGTGAAGGAGATCCTAAAGGGAGGCGAGAACT
CGCTGGAGGTGCTTGGCCCGCTGGATGAGAACGATCCCGAGGGGGACCCTGAAGATGACG
AAGAAGAGGAGGACGACGAGGACGAGGAAAAGGACGGGAACGATAACGGCGACGGTGGCC
TGGGCTCGAAGCTGCAGGGCCTGAAGGTGGAGGAGGAGGACTAGTCGTGTGCTAGGGTGG
TGGACTGGCCACTATATCTTTTTGCTCCGGTTAGCTTCTGAAATGTCCACAGTATGGGTT
AAAATTTTCACATGAAGAGAGCTCACTGTGGCTCAATTGTTTTGAACTGAGCCAAGCGCA
AGCAGCCAGACGGGCGG

Homology of Contig U35_17204 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46560.1	545	1e-72	protein\|RAN GTPase-activating protein 1, putative, expressed
Brachypodium v1_2	Bradi3g36420.2	552	3e-71
Arabidopsis v10	None