barSeed - Barley Seed Development Database

Probe CUST_1728_PI390587928

Source Contig U35_14022

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1728_PI390587928	Hv_44K_v2	CTTCGTAGGTGAGAAAACCTGCTACTTCGGTTCAGATTTACCCATCATGTTGACTCCAAA	1814	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366048	1914	2e-23	1822 - 1879	100	58 / 58	plus	ABC05892 ABC05893
MLOC	MLOC_11494.2	2902	2e-23	2258 - 2315	100	58 / 58	minus	ABC05892 ABC05893
MLOC	MLOC_11494.1	2745	2e-23	2167 - 2224	100	58 / 58	minus	ABC05892 ABC05893 ABC12784
JLOC1	JLOC1_7617.1	755	1e-23	588 - 645	100	58 / 58	plus
Harvest35	U35_14022	1889	3e-25	1815 - 1874	100	60 / 60	plus

Contig Sequence (1889 bp)

>U35_14022 1889 Hv_44K_v2
GCCGCCGCCTCCCTGCCGCCGCGTCCTCGCTCTCGCAAGCACCACCGGCGACACCCCCGT
CTCCGGCGACCGGCTTCCTAGCGCCCTCCCCGCTCGCCCCCTCGGCCCGCAGCACATCCA
GGCGCGCGGCGACCCTCCTCGTCGCGGCAAGCACACCCACCTCGACGGTCCCCCGACCCA
AGTTTCAATCATGGCGCGCCGAGGATTGATGGAGCAGGACCTAACCAAGCTTGATGTCAC
CAAGCTACACCCGTTGTCGCCTGAAGTTATCTCGCGCCAAGCGACAATCAACATTGGTAC
AATTGGTCATGTGGCCCATGGAAAGTCTACTGTTGTGAAAGCTATATCTGGAGTTCAGAC
TGTTCGCTTCAAGAATGAGCTTGAACGTAACATCACTATCAAGCTGGGCTATGCTAACGC
AAAAATCTATAAATGCGAGGATGACAGATGTCCACGACCAATGTGTTACAAGGCTTATGG
AAGCGGAAAAGAAGATACTCCTGCCTGTGATGTTCCTGGGTTTGAAAACACTAGGATGAA
GCTCCTGAGACATGTTTCCTTTGTTGATTGTCCGGGCCACGACATTCTCATGGCTACAAT
GCTTAACGGAGCAGCTATCATGGATGGAGCCTTGCTTTTGATAGCAGCAAATGAAAGCTG
CCCGCAACCCCAGACATCTGAGCATCTTGCAGCTGTTGAAATCATGCGCCTCCAGCATCT
CATAATTTTGCAAAATAAGATTGATCTTATCCAGGAAAGTGCAGCAATGAACCAGCATGA
AGCAATCCAAAAATTCATCCAGGGCACGATAGCGGAAGGTGCTCCTGTGGTGCCAATATC
TGCCCAGCTGAAGTACAACATTGATGTGATCTGTGAATATATTATTAAGAAAATCCCCAT
TCCGGAAAGGAACTTCACTTCACCTCCCAACATGATTGTTATTCGTTCCTTTGATGTCAA
CAAGCCCGGTTCAGAGGTTGATGAAATTAGGGGTGGGGTAGCAGGTGGCAGCATCCTCAG
GGGAGTCCTCAGGGTGAACCAGAACATTGAAGTTCGCCCTGGCATTGTCATGAAGGATGA
GAGTGGCAACATCAAGTGCACTCCAATCTATTCGAGGATTGTCTCGCTCTATGCTGAGCA
GAATGAACTCCAATTTGCTGTGCCAGGAGGACTTATTGGTGTGGGAACAACCATGGATCC
AACTTTGACTCGTGCCGACAGGCTGGTTGGCCAGGTTCTAGGAGAAATCGGGTCGCTTCC
CGATGTATTCGTGGAGCTTGAGATCAACTTCTTCCTTCTCCGAAGGCTGCTGGGTGTGAG
AACAAAGGGCACAGAGAAGGCAGGGAAGGTCTCCAAGCTCACCAAGGGCGAGATCCTGAT
GCTTAACATCGGATCCATGTCCACTGGCGCCCGCGTGGTTGCCGTGAAGAACGATCTCGC
CAAGCTCCAGCTCACCGCGCCCGTCTGCACCAGCAAGGGTGAGAAGGTGGCCCTGAGCCG
CCGTGTCGAGAAGCACTGGCGCCTCATCGGGTGGGGCCAGATCCAAGCCGGCGCGACGCT
CGAAGTCCCACCCTGCCCGCTCTGAAGCACACCCCCGTCTGAGCGAAAAACCGCAGCAGC
TTGTGAAGGAAGAGACCTGAAATGTGGGAGGGCAGAGAGCTCCTAGGTACAATTTTTGTG
AGGTGGAGGAGAAAACATCGCGAGTCTATAAGTCTTGTCGTCGACGGATTTGTCTACGAT
ACTAGTTTGCTTCTTTCTCTTTGTTGGAATTTAGGGTTTGTTACACTTGCCATGTTATTA
TCATGGCCGTTGTGCTTCGTAGGTGAGAAAACCTGCTACTTCGGTTCAGATTTACCCATC
ATGTTGACTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g41400.1	465	protein\|eukaryotic translation initiation factor 2 subunit gamma, putative, expressed
Brachypodium v1_2	Bradi4g02587.1	465
Arabidopsis v10	AT1G04170.1	465	\| Symbols: EIF2 GAMMA \| eukaryotic translation initiation factor 2 gamma subunit \| chr1:1097423-1099702 FORWARD LENGTH=465