barSeed - Barley Seed Development Database

Probe CUST_17281_PI390587928

Source Contig U35_31504

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17281_PI390587928	Hv_44K_v2	CGCTGATCGTGCCTTGGCGGCTGGTGCCAGCTGTGCTTCGGCTTCGCCTGCACCTGCGCT	387	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362277	2606	7e-23	415 - 474	98	59 / 60	plus	ABC21653
MLOC	MLOC_78492.1	961	7e-23	77 - 136	98	59 / 60	plus	None
JLOC1	JLOC1_52312.1	945	4e-23	76 - 135	98	59 / 60	plus
Harvest35	U35_31504	447	3e-25	388 - 447	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_31504 447 Hv_44K_v2
ACTCGCGGGCACACAGTCCAAGCTTCCACCACCCTTTCCGCCTCCGCCGGCGCCGGCGAC
GATGCCTCGCAAGGCCTCGTCCTCCTCAGATGCGAAGCTCAAGTGGCGGAAGCGGAAGCG
CTCACAGGACACCTCCCCGTCGAAGCAGTCCGGCGGGGCCGACCACTCCGACGACTCCGA
CTCCGCAGCGGCGAACGACGAGGACGACGCGCTCCACGGCTCCGCCAACGGGGGCGAAAC
CCTAGGCGCCCGTGGCGGTGATGACGACACCGTGCCCGACCTACGGGAGGCGGAGGTGCT
CTCCTCAGCGGAGCCCGTCTCTGGCTTCCCCTCGGCCACCCGCCGCACTATCAGCCGGCT
CCATCCCTCGGTGCTCGCAATTATCGCCGCTGATCGTGCCTTGGCGGCTGGTGCCAGCTG
TGCTTCGGCTTCGCCTGCACCTGCGCT

Homology of Contig U35_31504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None