barSeed - Barley Seed Development Database

Probe CUST_17264_PI390587928

Source Contig U35_17220

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17264_PI390587928	Hv_44K_v2	CTTGCTTGGCTTAATCATTCTACGTACTGTCAAAAAGTAGAGAAAATGGTAATCATGCTA	1742	GeneList: yellow MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.641	2.158	1.142	0.667	0.199	0.174
Raw	224.176	278.097	131.340	119.599	13.066	11.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07101	1818	3e-25	1743 - 1802	100	60 / 60	plus	ABC07101
Harvest35	U35_17220	1818	3e-25	1743 - 1802	100	60 / 60	plus

Contig Sequence (1818 bp)

>U35_17220 1818 Hv_44K_v2
GGAGTACTGACTGCCGCCGGAAGGAGACGAACACCAAAACCCTCACCTGACCCTCCCCGT
CAACCTCACCCGCCGCCGCCGCCGCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGATGGAC
TTCCAGGTCGTCGTCCTCGCCGGAGGCACTTCCGAGAAGCTCTCGCCCCTCGTCTCCAAG
GACGTTCCCAAGGCCCTCCTCCCCGTCGCCAACCGCCCCGCGATCTCCTACGTGCTCGAT
CTCCTGGAGTCCAGCGACCTCAAGGACATCATCGTGGTGGTGGAGGGGCAAGAGGCGGCC
CGCCTCGTCGGAGCGTGGATCTCTAGTGCCTACCTTGACCGCCTCGTCGTGGAGGTAGTT
GCAGTTACCGAGGACATTGGAACTGCTGGTGCATTACGAGCTATTTCGAAGAGACTGGTC
GCAAATGATGTTTTGGTGATTAGCGGCGACCTAGTAACTGATGTACTTCCTGGGGCTGTT
GCTGCTACCCATAGAAGAAATGGTGCAGCTGTTACTGCTTTACTATGTTCTGTTCCTGTT
AGTGGTCCTTCAGATGCTGCTTCTTCGGGAGGGAAAGATAAGGCTAAAAAACCATGTCGA
CTGAACATAGTTGGGCTAGACATAACAAGACAATTCTTGTTGCATGTTGTATCAGGAACT
GATGTTGAAAAGGATGTTCGAGTTTATAAGAGAAAAATTCGAGCTGTAGGTCAGATGGAA
ATTCGAAGTGACCTGATGGATGCTCATCTTTATGCCTTTAATAGGACAACATTGCAGGAT
GTACTGGAACAGAAAGAAACATACCGTAGCATCAGACTTGAAGTACTCCCATATTTAGTG
AAGAGCCAATTGAGGTCAGCTCCATCAGGCGGTGAAGGAACAATAGTTGATGAAACTGGG
AATGCTGTAGTTCCACTCAGCAGTAATTTACAGTGCTTGTCACAACATCGTGCAATTGCA
CCATCTGCTTTCAAGCAAGATTTATTACCAAGTTCAGGCAGTGGAACACATAGGTGTTGT
GTTTATATTGCTAGTAAAAACAAGTACTGTCACCGTTTGAACTCCATTCAGGCGTACTGT
GATATTAATCGAGACGTTATAGGGGAAGCTAGTCACCTATCTGGTTATTCCTTCTCTTCA
CATAATAACATCATCCACCCATCGTGTGTTCTTGGGTCGAAGACTACAGTCGGGCCACAG
TGCATGCTTGCCGAGGGTTCACAGTTAGGTGACAAATGTGGTGTCAAGCGATCTGTGATT
GGCCGTCATTGTCGTATCGGTTCGAATGTGAAGATTGTCAACTCTGTTGTCATGAACCAT
GTGGTTATTGAAGATGGCTGTCACATCCAAGGTTCTGTTGTATGTAATAATGTGCAACTT
CAAGAGCGTGCCGTTCTGAAAGATTGCCAGGTTGGAGCTGGTTATACTGTGACTACTGGT
AGTGATCACAAATCAGAATCCCTCGCGAGGAAGTAGAGCACATTTCGATAGTTTTACGGT
GGACTTGAGCACATGTGCGTATCAGATGCACTCCTATGAGTAAAGAAAGGGGATACAGTT
CTGTTTTGAGATTATTTTTCTTACAGTTTTTCGTTTGAGATATGATAGCAGAATTTTGGT
TCCAGTAACATTCAGAAAATTTTGGGTGCTTCGAATGTGAACTGCAGTTAGTGAGATGGT
GTCATGGTGTGGCTCATTTTTTTAATCTTGAGATGGTTTCATAGCACGTCTTGGATCAAT
GGCTTGCTTGGCTTAATCATTCTACGTACTGTCAAAAAGTAGAGAAAATGGTAATCATGC
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_17220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g23160.1	456	protein\|bacterial transferase hexapeptide domain containing protein, expressed
Brachypodium v1_2	Bradi3g31760.1	453
Arabidopsis v10	AT5G19485.1	456	transferases;nucleotidyltransferases \| chr5:6573907-6576352 REVERSE LENGTH=456