barSeed - Barley Seed Development Database

Probe CUST_17255_PI390587928

Source Contig U35_17225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17255_PI390587928	Hv_44K_v2	GGGAAATGTTTTTCTGATTCCGCCTTTGTTATGACTTATGAAATGTTTCTCCACACAAAA	942	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.280	9.594	1.867	0.305	0.082	0.084
Raw	1341.077	1399.156	231.494	66.053	4.304	5.480

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63996.1	1312	3e-21	1259 - 1312	100	54 / 54	plus	ABC06816
JLOC1	JLOC1_41976.1	1332	3e-24	1178 - 1236	100	59 / 59	plus
Harvest21	ABC06816	1028	3e-25	943 - 1002	100	60 / 60	plus	ABC06816
Harvest35	U35_17225	1028	3e-25	943 - 1002	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_17225 1028 Hv_44K_v2
GCAGACGTGGAAAGAGCGAGCCAAGATACAGTACAAGGAGGCTTCTTCAACCTTTCATCC
ATGGTCATGGACTCCCTCTCCCTCTACGAGATCTCCTGCTTCGCCGCTGGCTTTGCCGGC
AACCTCTTCGCCTTCGCTCTCTTCCTGTCCCCAGTGCCGACCTTCAAGAGGATCCTCAAG
GCCAAGTCCACGGAGCAGTTCGACGGGCTCCCTTACCTGCTCTCCCTGCTCAACTGCTTC
ATCTGCCTCTGGTATGGCCTCCCCTGGGTCTCCGACGGCCGGCTGCTCGTCGCCACCGTC
AACGGCACCGGAGCCGCGTTCCAGCTCGCCTACATTTGTCTCTTCTTCATCTACGCCGAC
AGCAGAAAGACCAGGCTGAGGATGGTAGGGCTCCTGGTTCTCCTAGTCTGCGCGTTCGCC
CTCGTCGCGCACGCGAGCCTCACCTTCTTCGACCAGCCGACCCGGCAGCAGTTCGTCGGC
GCCGTCAGCATGGCGTCGCTCATCTCCATGTTTGCTTCCCCGCTAGCCGTCATGGGCGTG
GTGATCCGGACGGAGTGCGTGGAGTTCATGCCCTTCTACCTCTCGCTCTCCACGCTGCTG
ATGAGCGCCTCCTTCGCGATATACGGAGTGCTGCTGCGCGATCTCTTCATCTATCTGCCC
AACGGGCTTGGAGTCGTCCTGGGAGCAACGCAGTTGGCGCTCTACGCTTACTACAGCAGG
AAATGGAGGTGCAAGGATTCCTCTGCGCCGTTGCTTGCCTGATCAGAGCTCAAGTGATCG
ATTCTCAGTTTTAGCTTGGCTAGGAAGTGTGGGTGTAGGGTTCTGTAGGAGAGAACTGCA
TGCCCTGTTTTCCCTTGTTGGTGCTGAATCTGCCTGTACAGATTTGCTGGCCTATGCCTC
TGTTTATACAAACGTGTCATTCTTTTCCCAAAGAATGCAAAGGGGAAATGTTTTTCTGAT
TCCGCCTTTGTTATGACTTATGAAATGTTTCTCCACACAAAATTTCAATTCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_17225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50460.1	231	1e-109	protein\|nodulin MtN3 family protein, putative, expressed
Brachypodium v1_2	Bradi2g47540.1	232	2e-125
Arabidopsis v10	AT3G14770.1	236	5e-67	\| Symbols: SWEET2, AtSWEET2 \| Nodulin MtN3 family protein \| chr3:4957787-4959202 REVERSE LENGTH=236