barSeed - Barley Seed Development Database

Probe CUST_17247_PI390587928

Source Contig U35_29202

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17247_PI390587928	Hv_44K_v2	ATCAAGATGTCTCCTTTGGTCTCAGAACTGCGCCTGTACGATATTGCAAATGTCAAGGGA	467	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.320	0.257	1.268	2.452	1.128	1.005
Raw	89.811	104.091	498.194	1533.445	248.387	237.816

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12615.1	1749	2e-24	1061 - 1120	100	60 / 60	minus	ABC03608 ABC03610
JLOC1	JLOC1_8468.1	1847	8e-25	630 - 689	100	60 / 60	plus
Harvest21	ABC28419	700	3e-25	468 - 527	100	60 / 60	plus
Harvest21	ABC03608	1679	3e-25	451 - 510	100	60 / 60	plus	ABC03608
Harvest35	U35_29202	700	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_15552	1679	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_29202 700 Hv_44K_v2
TGCAGNAATCGGCACGNAGGGCCCATTCCGTGCCGTGCCATACCTCAGCGTCACCGCCGC
CGCCTCGATCCCGCCTCTCGGGGACGCGCACCGCCGTTTCCCTTCTTCCTCGCCCCCCGG
CACATCCTGCTGCCGCCTCCACCCAGCCCGTCTCCGGCCACCTGGGTCTCCTTCCTTCCT
TGGAGTTGGACATGGCATCATCATCTGCTACCATCAGTTCACTTGGCGCTCAGGCCGCTC
TGGTTTCAAAGCCAAAGAATCATGGCATCAGTGGCACAAAGGCATCCTCATCAATTAGCT
TCGGATTGGGGTCCTCATTCCTGGGCAAGACGGCGTCTCTTCGGGCATCTGTAACCACAA
GGTTTGCGCCAAAGGCAAAGCCGGTGGCTCGGATACTACCGGAGGCATCTTACAAAGTGG
CGGTACTTGGTGCTGCTGGGGGCATCGGCCAACCATTGGGCCTGTTGATCAAGATGTCTC
CTTTGGTCTCAGAACTGCGCCTGTACGATATTGCAAATGTCAAGGGAGTCGCCGCTGATC
TCAGCCACTGCAACACGCCTTCCCAGGTTATGGACTTCACTGGCCCCGCGGAATTGGCCA
GCTGCCTGAAAGGTGTGGATGTTGTTGTCATCCCCGCCGGTGTCCCAAGAAAGCCAGGGA
TGACCCGTGATGACCTTTTCAACATCAACGCCGGCATTGT

Homology of Contig U35_29202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33720.1	398	1e-77	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g37140.1	399	5e-79
Arabidopsis v10	AT3G47520.1	403	5e-54	\| Symbols: MDH \| malate dehydrogenase \| chr3:17513657-17514868 FORWARD LENGTH=403