barSeed - Barley Seed Development Database

Probe CUST_17243_PI390587928

Source Contig U35_29206

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17243_PI390587928	Hv_44K_v2	AGCCAAGAAAAGGTCTCATTAGGTTTTGACATCAACGTGCTTCTCAGAGAAGCAAGGAGC	260	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369350	4698	2e-24	3091 - 3150	100	60 / 60	plus	ABC24810
Harvest21	ABC28423	692	3e-25	261 - 320	100	60 / 60	plus
Harvest35	U35_29206	692	3e-25	261 - 320	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_29206 692 Hv_44K_v2
GCCCAATCTTTGTAGGCTCAAGCTAGGTTTCAACCGCCCATATAGGGGAGAAGTATGACA
ATATACTAGCCGGAATTGAGCACCTTTTCACTCTCCAGTACATTGCTGCACAAATTGGAG
CTACTACTGACTCAGACTGGTGGGCTGCAAGGTCAGCGATCAATGATGCCATTGACAAGC
ACCCAAGGTGTCCTAGAAGTAGCTTCCAGTGGGTGGATCCGATTGAGGAAGAATGTCGTC
CTTCAGAGAAACATTATTGGAGCCAAGAAAAGGTCTCATTAGGTTTTGACATCAACGTGC
TTCTCAGAGAAGCAAGGAGCCGATGGTTAAAGCCTTCTGAAGTTTACTATATCTTGTTGA
ATCATGAACAGCTCCAGATCACCCATGAGCCACCAAATAGGCCACCCAGTGGTTCACTAT
TCCTTTATAATAGCCGTGTGAATCGGTTTTTCCGGAAAGATGGTCATGCATGGCGAAGGA
AAAGAGACGGAAGAACTGTTCGGGAGGCTCACGAGCGATTAAAGGTTGGAAATGTTCATA
CTTTGAGTTGCTACTATGCTCATGGAGAGCAAAATCTATGTTTTCAGAGACGATGTTTCA
GGATGCTGGAACCTGCATATGACCATATTGTGCTGGTACAATATAGAGAAGTAGCCGAGG
GACGATATAATTCAACATTGTCAAATTCGATG

Homology of Contig U35_29206 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31900.1	1004	7e-71	protein\|calmodulin-binding transcription activator 4, putative, expressed
Brachypodium v1_2	Bradi5g08167.2	888	3e-75
Arabidopsis v10	None