barSeed - Barley Seed Development Database

Probe CUST_17241_PI390587928

Source Contig U35_31520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17241_PI390587928	Hv_44K_v2	AGTAATAAGTATAATAATAGTAATGGACAAGGAGCCACAGCGCCAAGACGAGCTCCAGGC	96	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13974.1	1978	2e-24	88 - 147	100	60 / 60	plus	ABC19105
JLOC1	JLOC1_9512.2	2212	8e-25	85 - 144	100	60 / 60	plus
JLOC1	JLOC1_9512.1	1955	8e-25	87 - 146	100	60 / 60	plus
Harvest35	U35_31520	435	3e-25	97 - 156	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_31520 435 Hv_44K_v2
AAGTCGATCCCCCATTTCTCCAAAAATAAAAGAAGTTCCTTGGGAGGACCAACGGTGTCG
CGCGGTCAACTAGCTATGCTCCAATTCTTTTGATATAGTAATAAGTATAATAATAGTAAT
GGACAAGGAGCCACAGCGCCAAGACGAGCTCCAGGCGCCGCTGCTTCCCGGCGACGGCGG
GCAGGCCGCCGCCGCGGCCGGCAGCGCTTACGCGCTCGTCTGCTCCCTCGTCGCCTCCGC
AATCTCCATCATCTACGGTTACAATCGAGGTGTGATGAGCGGGGCGCAGAAGTTCGTGCA
GGAGGATCTGGGGATCAGCGACGCGCAGATCGAGGTGCTCATCGGCGCCACCAGCATCTA
CTCCCTCGTCGGCTCGCTGGCCGCGGGTTGGGCGTGCGACTGCGCCGGGCGCCGCCGCAC
TATGGCGCTCTCCGC

Homology of Contig U35_31520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None