barSeed - Barley Seed Development Database

Probe CUST_1723_PI390587928

Source Contig U35_14027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1723_PI390587928	Hv_44K_v2	TCTGTCGCTATGTGTCGTGGTGCTTGAATGAAATGACAATGGAAAAGTTCAGTTAAAAAA	540	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.577	1.353	1.172	0.972	0.530	0.397
Raw	50338.500	67212.600	50781.200	63668.967	12649.263	10274.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65126.1	361	9e-22	168 - 222	100	55 / 55	plus	ABC00075 ABC00660
MLOC	MLOC_29895.1	818	9e-22	636 - 690	100	55 / 55	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_29895.2	661	9e-22	510 - 564	100	55 / 55	plus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00106 ABC00130 ABC00135 ABC00141 ABC00186 ABC00196 ABC00204 ABC00338 ABC00349 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00787 ABC00971
MLOC	MLOC_4595.1	645	9e-22	385 - 439	100	55 / 55	minus	ABC00075 ABC00135 ABC00660
MLOC	AK365118	798	3e-21	745 - 798	100	54 / 54	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
JLOC1	JLOC1_42835.1	323	5e-22	172 - 226	100	55 / 55	plus
JLOC1	JLOC1_19842.1	803	5e-22	637 - 691	100	55 / 55	plus
JLOC1	JLOC1_2885.1	375	5e-22	115 - 169	100	55 / 55	minus
Harvest21	ABC00660	624	3e-25	551 - 610	100	60 / 60	plus	ABC00660
Harvest21	ABC00075	610	2e-22	541 - 595	100	55 / 55	plus	ABC00075
Harvest35	U35_14027	611	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_14058	627	1e-23	551 - 611	98	60 / 61	plus

Contig Sequence (611 bp)

>U35_14027 611 Hv_44K_v2
CCGATCTCCCAAGAAGGCACCACCACCACCCGCGCCGATGGCCCGCACCAAGCAGACGGC
GCGCAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCTGCGCGCAA
GTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCGCACAGGTTCCGCCCTGGAACTGTCGC
CCTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTT
CCAGCGCCTCGTCCGGGAGATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGTCCTC
CGCCGTCTCCGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGATGTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGGGAGCGCGCCTAGGTTTTGGGTGGCCGGTAATACCGAGCAGTAGC
TGTTCTTGTCCTGTGATCCGGATGTGTGCCGGATGCTTCCGTTCGTTTGTGTTGATATGA
TCTGTCGCTATGTGTCGTGGTGCTTGAATGAAATGACAATGGAAAAGTTCAGTTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	8e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	4e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136