barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17239_PI390587928Hv_44K_v2GAGGGTGGTGGTGAGCCACCTCATGGCAAACTTGGCTGGGCCATTGATGAGGATTTTGGT394GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35576110852e-24388 - 44710060 / 60plus ABC00208 ABC00374 ABC37919 ABC52239
MLOCAK37202910602e-24411 - 47010060 / 60plus ABC00208 ABC00374 ABC37919 ABC52239
MLOCMLOC_72880.25212e-2481 - 14010060 / 60plus ABC00374 ABC52239
MLOCMLOC_72880.115432e-24754 - 81310060 / 60plus ABC00208 ABC00374 ABC52239
JLOC1JLOC1_48500.110988e-25237 - 29610060 / 60plus
Harvest21ABC0037411483e-25378 - 43710060 / 60plusABC00374
Harvest35U35_315224543e-25395 - 45410060 / 60plus
Harvest35U35_119011973e-25413 - 47210060 / 60plus



Contig Sequence (454 bp)

>U35_31522 454 Hv_44K_v2
GGCATCCCATTCCCCAAATCCTCCACGCGCACACACACGCACACCAGAGACCAAAACACA
ACCAGCCATGGCGCTCCGCACGTTGGCCACGAAAAGAACCCTAGGCCTGGCGCTCGGCGG
CGCGCGGAGGGGCGTGGCGACGTTCACGCTCCCCGACCTCCCCTACGACTACGGCGCGCT
GGAGCCGGCCGTCTCCGGCGAGATCATGCGCCAGCACCACCAGAAGCACCACGCCACCTA
CGTCGCCAACTACAACAAGGCGCTCGAGCAGCTCGACGCCGCCGTCGGCAAGGGGGACGC
GTCCGGCGTCGTCCACCTCCAGAGCGCCATCAAATTCAACGGCGGCGGTCATGTTAACCA
TTCAATCTTCTGGAAGAACCTCAAGCCTATCAGTGAGGGTGGTGGTGAGCCACCTCATGG
CAAACTTGGCTGGGCCATTGATGAGGATTTTGGT



Homology of Contig U35_31522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g25850.21962e-66protein|superoxide dismutase, mitochondrial precursor, putative, expressed
Brachypodium v1_2Bradi2g30580.21844e-69
Arabidopsis v10AT3G10920.12315e-57| Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231