- Probe CUST_17236_PI390587928
- Source Contig U35_31524
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17236_PI390587928 | Hv_44K_v2 | GAGGCACGCAGTTTTATGGTCTCCCTGCAGGTTCTTCGTTGTGCCACCAAGAACTTTGCT | 402 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.214 | 1.230 | 1.408 | 0.947 | 0.568 | 0.615 |
| Raw | 296.294 | 472.294 | 469.310 | 467.225 | 102.860 | 123.001 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61453.1 | 3875 | 2e-24 | 2253 - 2312 | 100 | 60 / 60 | minus | ABC50730 |
| MLOC | MLOC_61453.2 | 3051 | 2e-24 | 1429 - 1488 | 100 | 60 / 60 | minus | ABC50730 |
| JLOC1 | JLOC1_40158.1 | 3051 | 8e-25 | 1564 - 1623 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31524 | 462 | 3e-25 | 403 - 462 | 100 | 60 / 60 | plus |
Contig Sequence (462 bp)
>U35_31524 462 Hv_44K_v2 ATTCTCACCGGCAATCCCAACTTCAACATGCAGTCGTCGCCCGGTGGTTCTACTCCCAAG GACAAGGACGCCCCTCGGTCACCGACGCCAAGCGCGCCCGGCTCACAAGGCCAAGGGGCT GCCACTCGCGACAAAGGGAACAAGAAGAGCAAGGTTGTGTCGCTGGCTACCACAATTCCG GTTGCGATCGGGGTGGTGTCATTGCTGTCACTGGGTGCTGTGGTGCTCTTCTGCAAGAAA AATGGGTCGTCGGTGCAGCCGCAGGCGACCTCCTCCGTGGTCGTCCACCCCCGCAACAGC CCTGACCCAGAAAACATGGTCAAGGTTGTCATGACGAGCAATGACAGCTTCGGCGCTACG TCGAGCGGAACCAGCAGCCGGGACAGTGACATTCACATGACCGAGGCACGCAGTTTTATG GTCTCCCTGCAGGTTCTTCGTTGTGCCACCAAGAACTTTGCT
Homology of Contig U35_31524 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |