barSeed - Barley Seed Development Database

Probe CUST_17232_PI390587928

Source Contig U35_17234

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17232_PI390587928	Hv_44K_v2	GGATAAAACAGAACGCTTAACGAACAAGCGAGCAAAACTATTATTTCATGTTAGTCTTCA	1348	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59047.1	1214	2e-24	42 - 101	100	60 / 60	minus	ABC06963
JLOC1	JLOC1_38397.1	1225	8e-25	1046 - 1105	100	60 / 60	plus
Harvest21	ABC06963	1426	3e-25	1349 - 1408	100	60 / 60	plus	ABC06963
Harvest35	U35_17234	1424	3e-25	1349 - 1408	100	60 / 60	plus

Contig Sequence (1424 bp)

>U35_17234 1424 Hv_44K_v2
GGGAGAGTGACAGCCGCTCAGCCCGCCGGCTCCCCCGACAACACCTCTCGCTTCACTCGC
CGGAGGGAAACGGAGCAAAGATGACCACGGCGGCGGCGGCGGCGGCGACGGCGACGATGC
GTCTGCCTTCCCCGTTCAAGGCCACGCCTTTCCGCCCTCCCTGCCACCGCGTCGTCCTGT
CGACGCGGGGCCCCAGGCGGGCCGGGCTGGCCGTCTCGGCGGCCGCCGGCGGGTCGCCCC
CCACCGTGCTCGTCACCGGCGCCGGAGGACGGACAGGCCAGATTGTGTACAGGAAGCTGA
AGGAGAGGGCAGACCAGTTTGTGGCCAGAGGGCTGGTCAGGACGCCGGACAGCAAGGCTA
AGATCGACGGCGGGGACGACGTGTTCATCGGCGACATCAGGGATACAGGGAGCATTGCTC
CGGCGATCGACGGCATCGACGCTCTCATCATCCTCACCAGCGGGGTCCCGAAGATGAAGC
CCGGGTTCGATCCTAGCAAAGGCGGTCGGCCCGAGTTTTACTTCGAGGAAGGGTCTGATC
CCGAGCAGGTGGATTGGATAGGCCAAAAGAACCAAATCGATGCTGCCAAGAGCATTGGTG
TAAAGCAGATAGTTTTGGTTGGATCCATGGGCGGAACAGATATCAACCATCCACTAAACA
AGCTTGGGAATGGGAATATACTGGTGTGGAAACGGAAGGCAGAGCAGTACCTAGCGGACT
CTGGTGTACCATACACAATTATAAGAGCTGGAGGACTACAAGACAAAGATGGTGGTGTGC
GTGAGTTGATTGTTGGAAAGGACGACGAGATCTTGAAGACTGAAACAAAAACTGTTGCCA
GGGCAGATGTTGCAGAAGTTTGCATACAGGCCTTGCTATTTGAGGAAGCAAAGTTCAAGG
CGTTTGATCTGGCTTCAAAACCTGAAGGTGAAGGAACACCAACGACAGACTTTAAGTCTG
TTTTTGCACAGATTGCTACTCGCTTCTAAGAAGACAAGGTCATTCTGGCCAATGAAGTGG
GGACGGTTTTTTAATTTAGGCGGTATGGAATTTGTACTGGGTCAGGAGGCTCCTCATCTG
GTCTGAGCAAGTAGGTAAAAGCAGGGAAGCATACTGCTATTAAGTAGCAGCACAATCAGG
TCAGAAGCTTTGAGAAGGAGGGAGAGGAGGGGTGTCTGTGGACTGTGGTGTCGATGCCAA
CTAAGCCTTTTGTTCCTAACTACAGCCATGGTGATTGTGACACAGGATGGTCCAGATTGC
AACAGTTATCCTCTCGATTAATCCTACGCCTGGCTACGTGCCAGACGTGTAAAGAAACTG
TCATATCTGACCGCCGTTCTAATTTTAGGGATAAAACAGAACGCTTAACGAACAAGCGAG
CAAAACTATTATTTCATGTTAGTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01970.5	294	2e-150	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g39190.1	292	8e-150
Arabidopsis v10	AT2G37660.1	325	4e-136	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:15795481-15796977 REVERSE LENGTH=325