barSeed - Barley Seed Development Database

Probe CUST_1722_PI390587928

Source Contig U35_14028

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1722_PI390587928	Hv_44K_v2	ATGCTGTTGATTACCCCGGTCGAAAATTGCAATGGAGATGATGTTGTTTATGTTAAAAAA	625	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.990	1.193	0.935	0.424	0.372
Raw	2770.263	5550.980	2843.557	3606.287	542.140	529.986

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC48883	175	5e-23	29 - 84	100	56 / 56	minus	ABC48883
Harvest35	U35_14028	696	3e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_47649	175	5e-23	29 - 84	100	56 / 56	minus

Contig Sequence (696 bp)

>U35_14028 696 Hv_44K_v2
CCACACCGTCGCCTCTCCTTCCTAAGAAGCCGCCACCGCAGCCCCCTCCGGCGACCCGCA
CCACCTCCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCGACGGGCGGCAAGGCGCCG
CGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCCCCTGCCACCGGCGGCGTGAAG
AAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGTTGCGCGAGATCCGCAAGTACCAGAAG
AGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAG
GACTTCAAGACGGACCTCCGGTTCCAGAGCTCCGCCGTGTCGGCCCTGCAGGAGGCCGCC
GAGGCGTACCTGGTCGGCCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGC
GTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGCGCGCCTAG
AGCTCCCTGCCTCTGCGCGTCCCGCCCGCCGCCATGGTTCCTTGTTGAATGGTCCTGCCG
ACGGATTCGTTCTGCCCTGCTACTGCTAGCCTAGTCCAGTCGTGCTTCGAGTTGTCATTA
GGATTTGTTCTGTACTGTTAGTCTCATGCTGTTGATTACCCCGGTCGAAAATTGCAATGG
AGATGATGTTGTTTATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	1e-86	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	2e-87
Arabidopsis v10	AT5G65360.1	136	7e-87	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136