- Probe CUST_17225_PI390587928
- Source Contig U35_43501
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17225_PI390587928 | Hv_44K_v2 | AAGCTAAGGAGGTTCAGGTACAACACCTCGGTGGAGATCATCTTCCAGAGCACGGCGCTG | 558 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.378 | 1.063 | 5.206 | 3.678 | 0.931 | 0.538 |
| Raw | 4.003 | 24.274 | 98.777 | 101.116 | 9.730 | 5.188 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369820 | 2032 | 2e-24 | 1442 - 1501 | 100 | 60 / 60 | plus | ABC26545 ABC39897 |
| MLOC | MLOC_61948.1 | 2054 | 2e-24 | 1440 - 1499 | 100 | 60 / 60 | plus | ABC26545 ABC39897 ABC40171 |
| MLOC | MLOC_61948.2 | 2052 | 2e-24 | 1437 - 1496 | 100 | 60 / 60 | plus | ABC26545 ABC39897 ABC40171 |
| JLOC1 | JLOC1_40514.1 | 2047 | 8e-25 | 1433 - 1492 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40236 | 649 | 3e-25 | 559 - 618 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43501 | 649 | 3e-25 | 559 - 618 | 100 | 60 / 60 | plus |
Contig Sequence (649 bp)
>U35_43501 649 Hv_44K_v2 ATCGACGTGCTCATGGCAGCTGACGCCCCGCCGGCGCACTACCACATGGTGGCGCTCGCA AACCAGCCGCCGGAGCCCGACCCGCAGATCCCGGGGTTCGTGTCCCGCGGCCTCGTCCGC TACGCCGGATCCTCCCGGAGCAACAACGGGCTGCCGGTGCCAACGCCGCTCATGCCCAGC CAGCACAACACCATGCCGTCCTACTACTTCCACAGCAACCTCACCGGCCTCGCCCACCCA GACCGCCACCGCGTCCCCATGCACGTCGACGAGCGCCTCTTCTTCGCGCTCGGCCTCGGC TCCATCTGCCGCGGCACCAACAAGACGTGCGAGCGTGGGCGGAGCCCCGAGACCATCGTG GTGGCCACCATGAACAACGTCTCCTTCCGCCACCCCACCAACGCGTCGCTCCTCGAGAGG TACTACGACGGCCGGACAAGTGGGCTCTACACGGAGGACCTCCCCGACCATCCGCCGCAC CCGTACAACTACACGGACCGCGCGCTCATCCCGCCGGGGCCGATGGAGAAGGCGCTGGAG CCGACGTTCAAGGCCACCAAGCTAAGGAGGTTCAGGTACAACACCTCGGTGGAGATCATC TTCCAGAGCACGGCGCTGCTGCAGAGCGACTCCAACCCCATGCACCTCC
Homology of Contig U35_43501 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g42200.1 | 591 | 5e-128 | protein|laccase precursor protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g11780.1 | 592 | 1e-129 | |
| Arabidopsis v10 | None |