barSeed - Barley Seed Development Database

Probe CUST_17219_PI390587928

Source Contig U35_43505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17219_PI390587928	Hv_44K_v2	ATACGTGATCATACGGCCTCTCAGGGGTTTTTATACAAAACTTAGCAAGCTCTCCTCTCC	353	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60939.1	4827	2e-24	3446 - 3505	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.5	4707	2e-24	3326 - 3385	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.6	4798	2e-24	3417 - 3476	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.4	4311	2e-24	3368 - 3427	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.7	1446	2e-24	1257 - 1316	100	60 / 60	plus	ABC40248
MLOC	MLOC_60939.8	1532	2e-24	1343 - 1402	100	60 / 60	plus	ABC40248
MLOC	MLOC_60939.12	2682	2e-24	1302 - 1361	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.9	2997	2e-24	1626 - 1685	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.2	4736	2e-24	3355 - 3414	100	60 / 60	plus	ABC13251 ABC40248
MLOC	MLOC_60939.3	4731	2e-24	3350 - 3409	100	60 / 60	plus	ABC13251 ABC40248
JLOC1	JLOC1_39774.4	3251	8e-25	1324 - 1383	100	60 / 60	plus
JLOC1	JLOC1_39774.2	3305	8e-25	1378 - 1437	100	60 / 60	plus
Harvest21	ABC40248	631	3e-25	354 - 413	100	60 / 60	plus	ABC40248
Harvest35	U35_43505	631	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_43505 631 Hv_44K_v2
GGCCCCCCCTCGGACTCTTGGGGGTCTCTTATAGCAGGAATGGGTGAACAAATATTCCCA
GATCTTGTGCATGGTTGTTAGATAATTGAAATCTGATAATAGTAATGCTGAACGATCTGG
AGCTGCCCAGGGACTAAGTGAGGTCTTTGCCTCTGTTGCTTCCTTCTATTGAGGATGGGA
TATTCAGTGATAATTGGCGTATCCGGCAGAGTTCGGTGCAACTTTTGGGAGATCTTTTGT
TCAAGGCAACTGGAACTTGTGGGCAGGCATGAACCTCTCAGGGGTATAACCCAATCATGA
ACCCTGTGTTCCATTCGCTCCGGATCCGGCTCCATATCAGGTGGCAGGGACCTATACGTG
ATCATACGGCCTCTCAGGGGTTTTTATACAAAACTTAGCAAGCTCTCCTCTCCCTCGCAA
TCGCAAACCCCGAGCCGCGCCCGCTCCCCACTCCCAAATCATCCATTCCTCCCGGGCGCG
CACCATCCGCCGCGAGCCACCTCGCCCCCTCCACTTCCGGCCGCCGCGACCCTCCACTCC
CGGGCCGTCGCGACCCTCCTCGGACCATCCACTCCACTCCCGGCCGCCGCGACCCCCTCG
CCCCTCTCCACTCCCGGGCGCTCGTCACGGG

Homology of Contig U35_43505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None