- Probe CUST_17210_PI390587928
- Source Contig U35_29219
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17210_PI390587928 | Hv_44K_v2 | AATGGCATGAAAGAATCTGACCAGAGGCATGCAACTCTAAGAATAACTGCTTCAGTGGAA | 260 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.584 | 0.653 | 1.441 | 1.410 | 0.951 | 0.882 |
| Raw | 29.508 | 51.026 | 98.880 | 147.218 | 35.339 | 37.348 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364287 | 2421 | 7e-23 | 721 - 780 | 98 | 59 / 60 | plus | ABC08742 ABC38593 |
| MLOC | MLOC_49413.1 | 2144 | 7e-23 | 1475 - 1534 | 98 | 59 / 60 | minus | ABC08742 |
| MLOC | MLOC_49413.2 | 1620 | 7e-23 | 945 - 1004 | 98 | 59 / 60 | minus | ABC08742 |
| MLOC | MLOC_49413.3 | 2208 | 7e-23 | 1534 - 1593 | 98 | 59 / 60 | minus | ABC08742 ABC38593 |
| MLOC | AK370013 | 2277 | 9e-22 | 747 - 801 | 100 | 55 / 55 | plus | ABC08742 ABC38593 |
| MLOC | AK360873 | 1832 | 9e-22 | 724 - 778 | 100 | 55 / 55 | plus | ABC08742 ABC38593 |
| JLOC1 | JLOC1_31633.3 | 2182 | 4e-23 | 578 - 637 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_31633.2 | 2032 | 4e-23 | 556 - 615 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_31633.1 | 3237 | 4e-23 | 556 - 615 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC28446 | 710 | 3e-25 | 261 - 320 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08742 | 2112 | 1e-23 | 708 - 767 | 98 | 59 / 60 | plus | ABC08742 |
| Harvest35 | U35_29219 | 710 | 3e-25 | 261 - 320 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3252 | 1222 | 1e-23 | 708 - 767 | 98 | 59 / 60 | plus |
Contig Sequence (710 bp)
>U35_29219 710 Hv_44K_v2 GAGAATGTGGAAAGTATATATCGGAACCCGCAAACATCAAAATTGAAGCAGATGAACGTG ATACCTATGAGGAAACCAATGAGGAGCCTGTAGCTATGATAGAAGAATCTCCACCTGATA TCGGACAAGATGGTGACGATGGAGAAAGTAGTGATTCATCCTGGAATATGGAGTGTAATC AGGTTTTGAGAGTGAAGTCCATATATATCAGCTCTGCGATTCTAGCTGCTAAAAGTCCCT TCTTTTACAAGCTTTTCTCAAATGGCATGAAAGAATCTGACCAGAGGCATGCAACTCTAA GAATAACTGCTTCAGTGGAAAGTTGACGACAAATCAGCCAACCCTTCTGCTTGACATCTT GATGATGTCTGACAAATTTGAAGTTGTTTCTTGCATGCGACACTGTAGTCAATTGCTAAG AAGCTTACCTATGACCACAGAATCTGCACTTCTCTATCTAGATTTGCCTTCCAGCATTTC AATGGCTGCAGCAGTTCAGCCACTGACTGATGCTGCCAAGGAATTCCTGGCCAACAAATA CAAGGATTTGACTAAGTTTCAGGATGAAGTGATGAACATCCCCCTTGCTGGGATTGAAGC CATCTTATGTAGTAATGACCTTCAGGTAGCATCGGAGGATGCAGTCTATGACTTCGTCAT CAAGTGGGCTCGTGCTCAATACCCAAGAACAGAAGAAAAACGTGAAATCT
Homology of Contig U35_29219 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g31100.1 | 537 | 9e-103 | protein|E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed |
| Brachypodium v1_2 | Bradi1g39260.1 | 563 | 8e-108 | |
| Arabidopsis v10 | AT3G61600.1 | 561 | 7e-69 | | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22797953 FORWARD LENGTH=561 |