- Probe CUST_171_PI390587928
- Source Contig U35_45857
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_171_PI390587928 | Hv_44K_v2 | GAGGAATGGCTGCAAGTGTACATTTTGTAACACGTTTTTATAATGGTTTTTGTGGTGTAA | -1 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.492 | 1.800 | 1.223 | 0.765 | 0.418 | 0.457 |
| Raw | 642.986 | 1147.745 | 716.562 | 701.582 | 133.971 | 160.698 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC45216 | 179 | 1e-23 | 16 - 76 | 98 | 60 / 61 | minus | ABC45216 |
| Harvest35 | U35_45857 | 179 | 1e-23 | 16 - 76 | 98 | 60 / 61 | minus |
Contig Sequence (179 bp)
>U35_45857 179 Hv_44K_v2 TTTTTTTTTTTTTTTTTACACCANCAAAAACCATTATAAAAACGTGTTACAAAATGTACA CTTGCAGCCATTCCTCCCTACTAGTTTACACTCTAACCGGTATTGACAAGCATCAAGCAG AAATACAAATCCCACCAACAGCCGGGGGGGGGGGGGGAGCTAGCACATTATCTCTCCCT
Homology of Contig U35_45857 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |