barSeed - Barley Seed Development Database

Probe CUST_17193_PI390587928

Source Contig U35_20890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17193_PI390587928	Hv_44K_v2	AACTTCCGCATCGTAAAAGATGGGTGGAGCGCCCGCGGCGGCCAAGCACGGAATCCATAC	500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55294.3	1755	2e-24	522 - 581	100	60 / 60	plus	ABC11736
MLOC	MLOC_55294.1	2197	2e-24	525 - 584	100	60 / 60	plus	ABC11736
MLOC	MLOC_55294.2	1917	2e-24	661 - 720	100	60 / 60	plus	ABC11736
JLOC1	JLOC1_35651.3	2043	8e-25	663 - 722	100	60 / 60	plus
Harvest21	ABC14197	669	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_20890	694	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_20890 694 Hv_44K_v2
CCGATACGGTCTAGCTCAGCTCAGCTCAGCTAAGCTCAGCAAGCATGGCTTGGCTGCGAC
TGCAAGCTGTCGCCGCCGTCCTAGCTGTGCTCGCCGCCGCCGGCGTCGCGCACAGCTTCG
AGTACCACGAGGCCACCCTGGACGCCATCCAGCTCGGCTTCCGCAACGGCAGCCTCTCCT
CGGCCGCGCTCGTCCGGTTCTACCTGGACCAGATCGACCGCCTCAACCCGCTGCTGCACG
CCGTCATCGAGGTCAACCCGGACGCGCTCCGGCAGGCCAACCGCGCCGACGCCGAGCGCC
GCCGCCGCACGGCCACCGGCACGCTGCATGGGGTCCCCGTCCTGCTCAAGGACAACATCG
CCACCCACGACGCGCTCAACACCACGGCCGGCTCCTTGGCGCTCCTCGGCTCCGTGGTGA
AGCGCGACGCCGGCGTGGTGGCCAGGCTGCGGCGCGCCGGCGCCGTGGTGCTCGGAAAGG
CCAGCCTCTCCGAGTGGGCCAACTTCCGCATCGTAAAAGATGGGTGGAGCGCCCGCGGCG
GCCAAGCACGGAATCCATACGTGCTCTCGGCCAGCCCGTGCGGGTCCAGTGCAGGGTCCG
GCGTGGCCGCGGCGGCCAACTTGGCCGCCGTTACGCTGGGCACGGAGACCGACGGCTCCA
TACTCTGCCCGTCGTCTTTCACTCCGTGGTCGGG

Homology of Contig U35_20890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g10460.1	504	5e-63	protein\|amidase, putative, expressed
Brachypodium v1_2	Bradi5g00860.1	520	8e-56
Arabidopsis v10	None