barSeed - Barley Seed Development Database

Probe CUST_17188_PI390587928

Source Contig U35_20895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17188_PI390587928	Hv_44K_v2	TTGTAATGCAGCTGTTGCACCTCTATAATATTATTTGAAATTCATGTTCAATCGACTCCC	810	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.430	1.960	2.218	0.951	0.301	0.282
Raw	2510.883	5372.510	5218.017	3468.863	381.280	397.765

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78350.1	518	6e-24	419 - 477	100	59 / 59	plus	ABC14272
JLOC1	JLOC1_52218.1	576	3e-24	419 - 477	100	59 / 59	plus
Harvest21	ABC14272	895	3e-25	811 - 870	100	60 / 60	plus	ABC14272
Harvest35	U35_20895	895	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (895 bp)

>U35_20895 895 Hv_44K_v2
TCCTCACTCACAAGCCTCCCTCCTCCCTCTCCGCTCGGTCAGCCGCCGCAACAAAAGCAT
GGGCCTCTCGGTGATCGCGCCGCCGGCGGGCGACTCGGCGTCCCCGGCGCACCGCCGCGC
GCGCCGCGCCTTCCTTGTCTCCAACTACATGATCCTCGGCGCGGCGTCCGGGTGCGGCTT
CCTCACGCTCTCGCTCCGCCTCGTGCCCTCCGTCAACGGCTTCCTCCTCATCCTGCTCCA
CGCGCTCACCGTGGCGGCCGCCGTGGCCGGCTGCGCCGTCATCGCGGCGCCCGACCCGCC
GCGGGGCCGCGTCTACACCGCCCACATGTCCGGCACCGTCGTCGTGTCCATCCTGCAGGG
CGCCGCCGCCGTGCTCGCCTTCTCCCGCACCTCCGAGTTCCTCGTCGACGGGCTCAGGTC
CTACGTCCGCGAGGAGGACGGCGCCGTCATCCTGCGCATGATCGGGGGCCTCGGCATCGC
CATCTTCTGCCTCGAGTGGGTCGCCCTCGCGCTCGCCTTCGTCCTCAGGTACTACGCCTA
CGTCGACAGGGAGTGCGGCGGCAACCCCATGCGCCGCAGCGCCAAGGTCGGCGGCGAGGA
CGGCGCCGGCAACTGGCCCTGGCCATTCCAGGTCTGATCTCATCCGCCTCAAGGATGAGG
ACGATGCAGCAGTTTATGATGTGGTTGGAAGGGGTGTCTGAAGGCGAGAAGAACTGAGAA
CTCATAGTTCTTGGGAGGAAAACTAGTGTTTGGCGATATTATTATTCGTTTATTGGATTG
GGTTGTATTGTGTGGTAGTATATGATTATGTTGTAATGCAGCTGTTGCACCTCTATAATA
TTATTTGAAATTCATGTTCAATCGACTCCCATATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41900.1	194	1e-97	protein\|expressed protein
Brachypodium v1_2	Bradi5g14540.1	193	2e-99
Arabidopsis v10	None