barSeed - Barley Seed Development Database

Probe CUST_17186_PI390587928

Source Contig U35_20897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17186_PI390587928	Hv_44K_v2	TTTGTGATGTATACAAGCAGATACACAAAGGGCATATTTGATTGTCTTGGTTGCGTCAAA	632	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.800	4.898	2.919	0.954	0.134	0.119
Raw	97.725	442.060	213.381	114.065	3.166	3.247

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56007.1	1968	9e-22	1914 - 1968	100	55 / 55	plus	ABC14342
JLOC1	JLOC1_36188.2	3338	1e-23	3030 - 3087	100	58 / 58	plus
JLOC1	JLOC1_36188.1	2259	1e-23	1891 - 1948	100	58 / 58	plus
Harvest21	ABC14342	696	3e-25	633 - 692	100	60 / 60	plus	ABC14342
Harvest35	U35_20897	695	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_20897 695 Hv_44K_v2
GGCATGACCGGCATCCGCGTGGGCGGGCAGCAGGTGCCGGTCGCGGAGTCGGTGTTCTCA
ACGGCCGGGACGCTGGTGGACTCCGGCACGGTGATCACGCGGCTGCCGGCGACCGCCTAC
ACCGCGCTGTCCTCGGCGTTCGACAAGGTCATGTTGGCGCGCGGGTACAAGAAGGCGCCG
GGGTACTCGATCCTGGACACCTGCTACGACTTCACGGGGCTGAGCGATGTGGAGCTGCCG
ACGGTGTCGCTGGTGTTCCAGGGCGGCGCGTGCCTGGACGTGGACGTGTCCGGGATCGTG
TACGCCATCAGCGAGGCGCAGGTGTGCCTGGCGTTCGCGTCCAACGGCGACGACGAGAGC
GTCGCCATCGTCGGGAACACGCAGCAGAAGACGTACGGCGTGCTCTACGACCTCGGCAAG
AAGACCGTCGGCTTCGCCCCCGGATCCTGCTGATTTGACAGGCTCGTCGTGATTATTGAA
TAACTAAGCTGCATCCACCAAATGGTCAGTGGCTATACATAACTTTACATATGTGAGAAA
TGCGTATACACCAACTGTAAGCGATGGAAAATGGAATCGGTAGGCTTCGATACAAGTAAA
AAACAGAGAAGCGGTGACACATTGACGCTGTGTTTGTGATGTATACAAGCAGATACACAA
AGGGCATATTTGATTGTCTTGGTTGCGTCAAAAAA

Homology of Contig U35_20897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40818.1	520	1e-65	protein\|aspartic proteinase, putative, expressed
Brachypodium v1_2	Bradi1g36160.1	504	1e-75
Arabidopsis v10	None