- Probe CUST_17168_PI390587928
- Source Contig U35_44852
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17168_PI390587928 | Hv_44K_v2 | GCTGAGTATTGCCTCGAGTAGAACTTTTTAGTTTCAGAGAATATGTCCTTATTTTATGCA | 91 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.003 | 2.219 | 1.354 | 0.823 | 0.273 | 0.278 |
| Raw | 50.834 | 90.478 | 48.441 | 46.940 | 4.205 | 4.922 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_1589.9 | 1963 | 2e-24 | 1840 - 1899 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.6 | 1778 | 2e-24 | 1657 - 1716 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.7 | 1632 | 2e-24 | 1511 - 1570 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.8 | 1828 | 2e-24 | 1707 - 1766 | 100 | 60 / 60 | plus | ABC43054 |
| JLOC1 | JLOC1_972.12 | 1458 | 8e-25 | 1334 - 1393 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.11 | 1378 | 8e-25 | 1254 - 1313 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.10 | 1366 | 8e-25 | 1242 - 1301 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.9 | 1345 | 8e-25 | 1221 - 1280 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.8 | 1363 | 8e-25 | 1239 - 1298 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.7 | 1329 | 8e-25 | 1205 - 1264 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.6 | 1644 | 8e-25 | 1520 - 1579 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.5 | 1370 | 8e-25 | 1246 - 1305 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.4 | 1685 | 8e-25 | 1561 - 1620 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.3 | 1669 | 8e-25 | 1545 - 1604 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.2 | 1354 | 8e-25 | 1230 - 1289 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.1 | 1703 | 8e-25 | 1579 - 1638 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43054 | 513 | 3e-25 | 92 - 151 | 100 | 60 / 60 | minus | ABC43054 |
| Harvest35 | U35_44852 | 513 | 3e-25 | 92 - 151 | 100 | 60 / 60 | minus |
Contig Sequence (513 bp)
>U35_44852 513 Hv_44K_v2 TTTTTTTTTTTTTTTTTACCAAATCTGTTCTTCTTTATAAACAATGGTTAAATGTTCAAA CAACTTCGTCATAATCAACATGACAAAACATTGCATAAAATAAGGACATATTCTCTGAAA CTAAAAAGTTCTACTCGAGGCAATACTCAGCTTCAACAGTTGGTTTCCTATCGTCTCTCC TAAAGATTTAAAGCATCATTGTTACAACATATAAAGTATTCAAGAAATCAAAAGTACAAT GACATATTAAAAAACACCGAGCAATGTGGGCACTGCCACCCTCGACTCATTCGCTGAGGA CCTGTCCTCAACAACCAGCACCCTTCGACGGCTGAGGCATCGGGTCGGGGCAGGTGGCGT GCGTGGGATGACATAAGCGCATGCGCATGCAGGGGAGGGCGGCTCGCGCATAGAGGGGCG AGGCATCGGTGGTGGAACCCCAGTAGATGGAGGCCAAAACAGTACTTTGAGGTAAAAAAT TCATCCCAATATGTGTAGCTCAAATCATCATGT
Homology of Contig U35_44852 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |