- Probe CUST_17167_PI390587928
- Source Contig U35_44853
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17167_PI390587928 | Hv_44K_v2 | TTCAGAAGATTGTCTGAAGAGAAACAAATGCCATCAGATGAGAATGGTGTCCAGGCCGGT | 153 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.440 | 1.294 | 1.440 | 0.844 | 0.871 | 0.773 |
| Raw | 12.121 | 16.197 | 17.280 | 15.160 | 4.447 | 4.539 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367273 | 3121 | 2e-24 | 828 - 887 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66417.1 | 3682 | 2e-24 | 464 - 523 | 100 | 60 / 60 | plus | ABC36421 |
| MLOC | MLOC_66417.2 | 3685 | 2e-24 | 464 - 523 | 100 | 60 / 60 | plus | ABC36421 |
| JLOC1 | JLOC1_43764.2 | 3690 | 8e-25 | 464 - 523 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43764.1 | 3694 | 8e-25 | 465 - 524 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43066 | 255 | 3e-25 | 154 - 213 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44853 | 255 | 3e-25 | 154 - 213 | 100 | 60 / 60 | plus |
Contig Sequence (255 bp)
>U35_44853 255 Hv_44K_v2 GTTGCCCCTGTTGATCTCGCAAGCACCAAGCCCGCTCTTGCCCGCTGCACGAGGTCAAAG TTTGTTCATCATCCGAGCTCCTTCAGCTACAAGAGGATGCTGCCATTTCTCACGGAGAAT GATATCTCCTCTCAGGAAGGAGACAGGTCCAAGTTCAGAAGATTGTCTGAAGAGAAACAA ATGCCATCAGATGAGAATGGTGTCCAGGCCGGTGGAGAGATCCAGCCTGCCAATGTAGAA GTTTCTCTGAACGGC
Homology of Contig U35_44853 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |