barSeed - Barley Seed Development Database

Probe CUST_17166_PI390587928

Source Contig U35_44855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17166_PI390587928	Hv_44K_v2	TCAACAATCATGTACTATTATGCTGTGGGCATCTGATATAGCAAGTTATCCACTGTGAAA	13	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.096	1.483	1.320	0.952	0.302	0.328
Raw	167.260	359.645	273.071	315.061	34.882	40.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21029.3	1938	7e-23	1574 - 1634	98	60 / 61	plus	ABC43069
MLOC	MLOC_21029.1	1762	7e-23	1602 - 1662	98	60 / 61	plus	ABC43069
MLOC	MLOC_21029.2	1656	7e-23	1496 - 1556	98	60 / 61	plus	ABC43069
JLOC1	JLOC1_14588.1	1882	4e-23	1609 - 1669	98	60 / 61	plus
Harvest21	ABC43069	675	3e-25	14 - 73	100	60 / 60	minus	ABC43069
Harvest35	U35_44855	675	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (675 bp)

>U35_44855 675 Hv_44K_v2
TTTTTTTTTTTTTTTTCACAGTGGATAACTTGCTATATCAGATGCCCACAGCATAATAGT
ACATGATTGTTGACTAAAACGAAAACAACTCTATGGCTAAAGGCTAACCACAAACTAGAT
TTTTTTTTGGGAGATCTGCATGTCCTGAAAGTTTGCATTGAAGCCAGCACCATCAAACAG
ACGCCTTGGACGCAAGAAATTCGGCAGTAAAACTTACCCTCTCCGCCAATAGTCTGATGT
CTCTGAGGGGAACACCTTTCTTCAACTCCACCCGATCACACCAAAGAATCATTATACCAG
ATTACTGTATAGACAGCAGATGCATGAGTAGGATGAAATCAGTGTATTAATGGCACATGT
CTGCTCGCCCTTCCTTTTTTCCCGCCTGCTCCTCAGCTCATGTTTGGTAGAAAGGTCACC
TTGGAATGATAATACCATGATACATCTTCCAACTGTGCTCCAATCAAGCTGACATACATA
CGATGGTAAGATTGCAAGAAATTAAAAGAATATACATGCTATCTTTTCGATGGCAGCATA
TCATCTCTTGTAAGGCTTGATGTGATACGATTTGTATTCATCGCCAAATTTTGCCGATTC
TTCATCAACCCTTTTTTTCAGCCTTCTCCAGGTCCTTAACATGTCCGCTTGTATAAGACC
ACGATACAGTGTTTC

Homology of Contig U35_44855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None