- Probe CUST_17164_PI390587928
- Source Contig U35_44858
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17164_PI390587928 | Hv_44K_v2 | TGACTTGTTTCCTCTTCCGCCCTTGTCTGTAAAACATTTGGCTTATGTTTTGTTAAAAAA | 11 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.076 | 3.555 | 1.357 | 0.751 | 0.449 | 0.497 |
| Raw | 9876.777 | 9261.960 | 3093.703 | 2660.367 | 551.245 | 665.197 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC43075 | 455 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC43075 |
| Harvest35 | U35_44858 | 455 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (455 bp)
>U35_44858 455 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACAAAACATAAGCCAAATGTTTTACAGACAAGGGCGGAAGAG GAAACAAGTCAATTCCCGAACCAAGAGACCCATCCGTTGCAAGTGGAAAGGATCACGAAT GGTTCGCTCTTGACTCCTCCTCTCTCACCTTCATCTTCCCTTTCGCATTACAGTCTGCTT TAAACAAGTCTCGGAACAAAGTCTACGACACGCTCAAACTAATGAAGTACTCTCATTATT ACAAAATCAAAAGAAGAAGATACCTTCACAGTCTTTGACTTCCTGAGCAGGGGGGAGGNA GGGAGGGTNNCNNCNNNAACANCNTGACCAAAATGCCTGGGAGCTGATTCTGTTGGTGTT GGTTGATGCAAGTGAGAGCTTGACAAGACCCTTTCTGGTTGGAGATCGATCACGTTGCCT TCCTTCCCAAAATGATCAAAATGCCCCCAGTGGTT
Homology of Contig U35_44858 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |