- Probe CUST_17163_PI390587928
- Source Contig U35_44859
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17163_PI390587928 | Hv_44K_v2 | AAGAGCTGTGATAATTCTAAGCTCGATGAAGTTGTGGAAGAGGCTACCAAGCTCCAGGAA | 203 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.923 | 1.976 | 1.530 | 0.452 | 0.299 | 0.233 |
| Raw | 79.427 | 70.656 | 56.087 | 25.449 | 5.523 | 4.273 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7930.1 | 2849 | 2e-24 | 1980 - 2039 | 100 | 60 / 60 | minus | ABC25707 |
| MLOC | MLOC_7930.2 | 2855 | 2e-24 | 1986 - 2045 | 100 | 60 / 60 | minus | ABC25707 |
| JLOC1 | JLOC1_5248.2 | 2798 | 8e-25 | 806 - 865 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5248.1 | 2804 | 8e-25 | 806 - 865 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43076 | 411 | 3e-25 | 204 - 263 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44859 | 411 | 3e-25 | 204 - 263 | 100 | 60 / 60 | plus |
Contig Sequence (411 bp)
>U35_44859 411 Hv_44K_v2 AGGATTCGACCGCGCTCAACGAGGAGAAGGTGCAGGATGCAGAGCCCAAGGGTGTTACTT CTGACGAAAAGTGTGATGGTCCTGAGGAGGAGGAGGAGGAGGAGCAAGTTACAAAGCTTC CGGAAGAAGGAAACAGCAAAGCGGATGAACCAGAGCAGGGAGATGAAGTGGTTTCTTCTG TTGTGCCCATTGAATCTGCTGACAAGAGCTGTGATAATTCTAAGCTCGATGAAGTTGTGG AAGAGGCTACCAAGCTCCAGGAAGCTGCAGTTGAGGAAGAACAGAAGCTTGCCAGTGCTG AGAGGTCTGTTCCCTTGCCAGCAATGGAGGATTCACCTATCTTAGGTGTCATTTCCAAGG CCACACCGGGACCAGAGGAAGCCATCAACGAAGATGCTTTCAATTCCACCG
Homology of Contig U35_44859 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |