barSeed - Barley Seed Development Database

Probe CUST_17158_PI390587928

Source Contig U35_18592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17158_PI390587928	Hv_44K_v2	GGAAATCCAAGAAGTCAGACCTGTTGATGAGAGAAAATCAAGTGAAATAGTTCAACTTAC	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	2e-24	3082 - 3141	100	60 / 60	plus	ABC11348 ABC32895
MLOC	MLOC_70915.2	949	2e-24	528 - 587	100	60 / 60	plus	ABC11348
MLOC	MLOC_70915.1	1565	2e-24	528 - 587	100	60 / 60	plus	ABC11348
JLOC1	JLOC1_47084.2	914	8e-25	528 - 587	100	60 / 60	plus
JLOC1	JLOC1_47084.1	930	8e-25	528 - 587	100	60 / 60	plus
Harvest21	ABC34074	703	3e-25	133 - 192	100	60 / 60	plus
Harvest21	ABC11348	1264	1e-23	1151 - 1211	98	60 / 61	minus	ABC11348
Harvest35	U35_18592	981	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_18593	1272	1e-23	54 - 114	98	60 / 61	plus

Contig Sequence (981 bp)

>U35_18592 981 Hv_44K_v2
GATGGTTTGGACAGCCTATGTAGACAAAAGCTAGTTCCTTATGAGATTGAAAGTAAATCA
GGCACGGTTGTTTTACGCTGGGTGAATGGGCAACTTGAGAGAGTTGAAACTTGGGTTAAA
AGGGCTGCTGAACAAGAGACTTGGGATCCTATATCCCCTCAACAACGCCATGGGGGTTCT
ATTGTTGAAGTCTATAGAATCATAGAAGAGACTGCAGATCAATTTTTTGCATTCAAGGTT
CCTATGCGAATTGGGGAATTAAATAGCTTCTGTCGTGGTATCGACAAGGCATTTCAAATT
TATACACAACTTGTTACTCAACCCATAGTTGACAAAGAAGATTTAGTTCCACCTGTTCCT
GTCCTTACTCGATATAAAAAGGAGCTTGGAATCAAAGCTTTCGTAAAAAAGGAAATCCAA
GAAGTCAGACCTGTTGATGAGAGAAAATCAAGTGAAATAGTTCAACTTACGATGTCAAAG
CTATGTGTGCGGCTTAACAGTCTATATTATGCTATAAGCCAGCTAGGCAAGTTGGAGGAC
AGCATAAGTGAGCGGTGGGCTAAAAGGCAAAGTGACAAAATTAACATCAGACGATCAATG
AACGGCAAGTCAAAGAGCGTAGTCTCCAATCAGAAGAATCAATTTGATGGCAGTAGAAAA
GAAATCAATGCTGCTATTGACCGGGGTTAAAGGTCATATTTTGGGACCTCCAACAGCCAT
TCATCGACAATATGTACAAAAACAATGTTTCGCAAGCTCGATTGGACACTATTGTCGAAG
TTCTTGATTTGGTGCTTGCTCAACTCTGTGACGTCATTGTGGAGCAACTGCGAGATCGTG
TGGTTACAGGGCTTCTGCAAGCATCCCTGGATGGCTTAGTTCGGGTAATACTAGATGGAG
GTCCTACACGCATCTTCTCTCCAAATGATGCCCCTCTTTTGGAGGAAGATCTTGAAATTC
TTAAGGAATTCTTCATATCTG

Homology of Contig U35_18592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47930.1	1109	4e-132	protein\|expressed protein
Brachypodium v1_2	Bradi1g20630.1	1110	2e-135
Arabidopsis v10	AT5G06970.1	1101	3e-108	Protein of unknown function (DUF810) \| chr5:2158431-2166004 REVERSE LENGTH=1101