barSeed - Barley Seed Development Database

Probe CUST_17156_PI390587928

Source Contig U35_18593

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17156_PI390587928	Hv_44K_v2	TTGATGATCTGCGCGAAGTTACTCAAGGAGGCAAAAGCAAATTCGGAAGCGACTCCAAAA	734	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.892	1.652	1.582	1.622	0.598	0.541
Raw	174.234	502.490	417.056	704.197	87.537	85.018

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	2e-24	4398 - 4457	100	60 / 60	plus	ABC11348 ABC32895
MLOC	MLOC_50197.1	887	2e-24	551 - 610	100	60 / 60	minus	ABC11348 ABC32895
JLOC1	JLOC1_32053.1	716	8e-25	589 - 648	100	60 / 60	minus
Harvest21	ABC11348	1264	3e-25	471 - 530	100	60 / 60	minus	ABC11348
Harvest35	U35_18593	1272	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (1272 bp)

>U35_18593 1272 Hv_44K_v2
CCTGTTCCTGTCCTTCTCGATTAAAAGGACTTGGAATAAGCTTTCGTAAAAAAGGAAATC
CAAGAAGTCAGACCTGTTGATGAGAAGAAAATCAAGTGAAATAGTTCAACTTACGATGTC
AAAGCTATGTGTGCGGCTTAACAGTCTATATTATGCTATAAGCCAGCTAGGCAAGTTGGA
GGACAGCATAAGTGAGCGGTGGGCTAAAAGGCAAAGTGACAAAATTAACATCAGACGATC
AATGAACGGCAAGTCAAAGAGCGTAGTCTCCAATCAGAAGAATCAATTTGATGGCAGTAG
AAAAGAAATCAATGCTGCTATTGACCGGGTATGTGAATTTACAGGGTTAAAGGTCATATT
TTGGGACCTCCAACAGCCATTCATCGACAATATGTACAAAAACAATGTTTCGCAAGCTCG
ATTGGACACTATTGTCGAAGTTCTTGATTTGGTGCTTGCTCAACTCTGTGACGTCATTGT
GGAGCAACTGCGAGATCGTGTGGTTACAGGGCTTCTGCAAGCATCCCTGGATGGCTTAGT
TCGGGTAATACTAGATGGAGGTCCTACACGCATCTTCTCTCCAAATGATGCCCCTCTTTT
GGAGGAAGATCTTGAAATTCTTAAGGAATTCTTCATATCTGGCGGAGATGGGCTGCCTCG
TGGAACTGTTGAGAATTTGGTCTCGCGTGTTCGTCCTGTAATAAATCTGATCAAGCAAGA
GACCCGTGTGCTTATTGATGATCTGCGCGAAGTTACTCAAGGAGGCAAAAGCAAATTCGG
AAGCGACTCCAAAACCCTGCTGAGGGTCCTGTGCCACAGAAATGATTCAGAGGCATCACA
CTATGTAAAGAAGCATTTCAAGATACCCAGTTCAGCTCCCCCGAGCACCTGATTTTCGGG
GAAAAGAAAATCTGGAAACGCCTCGAAGGTACATATAATGGATGGAACGGTGCTTGGTCT
TGCAACCTAGGAAGTGTATCTTGTAATAATTGTGCATTATTAGCAGTAGGAGCTAGGGAA
CCATACGCTAGTTTTGATTCATGGGCATTGTATTGATTGATTGCTTCTACCCAGGAAATA
TTTAGATGTCTTACCCTTGTTGCTTTGGGGAGTTTTTAGCTGGATTTTGATGGCATTTCC
GTCTGATGGGAATGTTGGTCTGTTGTGGTTTCAGAACTGATGCTTACAATTCTGTAGGGT
GGTTTTTTATGGGTATGACCAATGTATCTTTTTGCAGTCATTTGTTGTGGTGTCAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_18593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47930.1	1109	1e-151	protein\|expressed protein
Brachypodium v1_2	Bradi1g20630.1	1110	2e-159
Arabidopsis v10	AT5G06970.1	1101	5e-101	Protein of unknown function (DUF810) \| chr5:2158431-2166004 REVERSE LENGTH=1101