- Probe CUST_17151_PI390587928
- Source Contig U35_44860
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17151_PI390587928 | Hv_44K_v2 | TACTAGAGTCAACCTAAGAGCATCTCTAGCAGACCCCGTATAATGCCGACTCGTAAAAGT | 39 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.383 | 1.723 | 1.251 | 0.816 | 0.565 | 0.856 |
| Raw | 59.197 | 108.841 | 72.510 | 68.883 | 17.439 | 29.880 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251131.1 | 1132 | 2e-24 | 886 - 945 | 100 | 60 / 60 | plus | ABC43077 |
| JLOC1 | JLOC1_40526.1 | 1064 | 8e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43077 | 470 | 3e-25 | 40 - 99 | 100 | 60 / 60 | minus | ABC43077 |
| Harvest35 | U35_44860 | 470 | 3e-25 | 40 - 99 | 100 | 60 / 60 | minus |
Contig Sequence (470 bp)
>U35_44860 470 Hv_44K_v2 TTTTTTTTTTTTTTTTGGTTTTTTTTTTAACTGGAAACGACTTTTACGAGTCGGCATTAT ACGGGGTCTGCTAGAGATGCTCTTAGGTTGACTCTAGTAGATATTCTGACGCACCCTTAA TTGCATATCTCAGGTAGTGATCGCCATCGACCGATCGTTACATGGACTTAGACGATAGTG AACTATCATAGCCCTACAGCTTCAGGTTGCCGCCGTACTCCTCGGGGAGCTGGGACTCCT TGATGGCGCCACGGAGGGTGGGGTCAAGGTCTTTATCGGCCACGAACACAAACTTCTTCC TGGTCCTATCGTCGATGAATGGGTACACCATCTTCCATGCTGCCATGAACATGTAGGGCA CGTGGATCAAGAACACTCGGCCCAGGCGCTCTGGGTAATAGCTCTGCATGATGTCCAGTG CCGCCACGTACCCGCGGATGTCGCAGTTGGCGTAACCCCAACCCCTCATG
Homology of Contig U35_44860 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |