barSeed - Barley Seed Development Database

Probe CUST_17147_PI390587928

Source Contig U35_44863

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17147_PI390587928	Hv_44K_v2	AGATTAAAGAGGATGAGAAGCTCAAGTTTGCAGCACAGGACCCTTCGTTCACTGGTAAAG	335	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.363	1.406	1.105	0.765	0.358	0.384
Raw	2553.380	3990.473	2785.117	2860.573	503.322	584.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357741	1930	7e-23	1088 - 1147	98	59 / 60	plus	ABC23989 ABC43084
MLOC	MLOC_58319.3	1286	7e-23	597 - 656	98	59 / 60	minus	None
MLOC	MLOC_58319.1	2333	7e-23	796 - 855	98	59 / 60	minus	ABC23989 ABC43084
JLOC1	JLOC1_37880.1	2274	4e-23	1270 - 1329	98	59 / 60	plus
Harvest21	ABC43083	620	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_44863	620	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_44863 620 Hv_44K_v2
CTCGGAGGAGCCTCAGAACCGGTCCCCCCCTCGGCGCCGAGCACGGCATGATTCAGAGGA
GCCCGGAGACATCTCTCCGCCACGAAGACGGAACCGCCAGGACTCTGCACAGCTGGACGA
CCTGTCACTCGCAAGAAGACAAAATTTGGGACAGAGCCTGGGAGATGGGGATATTTCTCC
ACCAAGGAAGGGTCGGAAGTCTGGATCAGATGATTTATCTCCACCTCGTAAGGGGAGAGA
CACTTCTCCAAGGAAGGTTAGAAAGGAAGGAGCTCCGAAAGAGACAAGGAGAGCTGGGTT
GATGTCAGCAGAGGAAGTTAAAGAGGACATCAAAAAGATTAAAGAGGATGAGAAGCTCAA
GTTTGCAGCACAGGACCCTTCGTTCACTGGTAAAGGGGCAAAGGTAGTGTTCCGAGACAA
GGAAGGAAAAAGGATAAATCAAGAAGACATACAGAAGGCAAAGAAAGACGAGAAGCCAAA
GGAAAAACATATAGAATGGGGTAAAGGGTTGGTGCAGAAACGAGCAGCTGAGGCTCGAGT
GGAGGAGCTTGAAAAGGAGAAGGATCAGCCATTTGCGAGAACAGGGATGATCCTGAGCTT
GACAGCATGCTGAAAAACAG

Homology of Contig U35_44863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08080.1	553	7e-56	protein\|BUD13, putative, expressed
Brachypodium v1_2	Bradi1g51560.1	565	1e-83
Arabidopsis v10	None