- Probe CUST_17139_PI390587928
- Source Contig U35_32892
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_17139_PI390587928 | Hv_44K_v2 | CTAGGGATTTTTATATGGTGCAGTTGGATTTTCTTGTGGTCTCGTTGGCCAAGGCATTGC | 290 | GeneList: darkorange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.753 | 1.164 | 2.186 | 2.106 | 0.840 | 0.738 |
Raw | 133.272 | 321.212 | 522.095 | 810.794 | 112.321 | 107.168 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK357567 | 1983 | 2e-23 | 1241 - 1298 | 100 | 58 / 58 | plus | ABC11316 ABC11317 ABC49874 |
MLOC | AK252537.1 | 1783 | 2e-23 | 1172 - 1229 | 100 | 58 / 58 | plus | ABC11316 ABC11317 ABC49874 |
MLOC | MLOC_53730.2 | 1349 | 2e-23 | 1287 - 1344 | 100 | 58 / 58 | plus | ABC11317 |
MLOC | MLOC_53730.1 | 1340 | 2e-23 | 1255 - 1312 | 100 | 58 / 58 | plus | ABC11317 |
JLOC1 | JLOC1_34532.3 | 765 | 1e-23 | 579 - 636 | 100 | 58 / 58 | plus | |
JLOC1 | JLOC1_34532.2 | 774 | 1e-23 | 588 - 645 | 100 | 58 / 58 | plus | |
JLOC1 | JLOC1_34532.1 | 1311 | 1e-23 | 1125 - 1182 | 100 | 58 / 58 | plus | |
Harvest21 | ABC28797 | 713 | 4e-24 | 396 - 453 | 100 | 58 / 58 | plus | |
Harvest21 | ABC11317 | 1206 | 4e-24 | 609 - 666 | 100 | 58 / 58 | plus | ABC11317 |
Harvest35 | U35_32892 | 607 | 3e-25 | 291 - 350 | 100 | 60 / 60 | plus | |
Harvest35 | U35_17573 | 1765 | 4e-24 | 397 - 454 | 100 | 58 / 58 | plus | |
Harvest35 | U35_17572 | 815 | 4e-24 | 609 - 666 | 100 | 58 / 58 | plus |
Contig Sequence (607 bp)
>U35_32892 607 Hv_44K_v2 TCGGGAGAAGAAGAAGAATTTTAAAAAAATGTCCACATGAATTCTAAAAGTATATGTTTG ACACGATTAATGTTGAACCACTAGAATACTTATGCCCTCGTAGCAACACACGGGCAATTA CAAGTGAATAATAACAAGTAGGTAGCGTATCTATTTGGTTTCAAGATTACAACATGGTTT CGTTCAAGTGTATGTATATGTCCATGGGCGTTTATAATACATAGCCAAGGGATCACAAAC CAACTTCAATGTGCTGCCAAAGCATGACCAGCATTGTCGTCCAGCGGCCGCTAGGGATTT TTATATGGTGCAGTTGGATTTTCTTGTGGTCTCGTTGGCCAAGGCATTGCGAACTTGATA ATGACTGCAAAGCGGAGTGTAAAGAAGTCAGAGAATGATGTACCTGTTCCACCTCTTCTA AAAACTTCTGTTTTGTGGGGTGCGTTCCTTGGTGTCTCTTCCAACACCCGTTATCAGGTA ATTAATGGGCTTGAGCGCTTGGTTGAGGCTTCGCCTCTTGGCAAGCGTGTCCCGGCTGCT TCTTTGGCATTCACTGTCAGCGTGCGCTTTGCAAATAACGTCTATGGAGGAATGCAGTTT GTGGATT
Homology of Contig U35_32892 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os07g13590.1 | 444 | 4e-56 | protein|expressed protein |
Brachypodium v1_2 | Bradi1g53580.1 | 428 | 3e-61 | |
Arabidopsis v10 | None |