barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17138_PI390587928Hv_44K_v2TAATGAAACAGTTGAAGAATTGGACAACCAACCTCATCAAGCTCAGAGTGCGGCTTTCGG199GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9701.9801.3330.6160.6110.544
Raw 39.83457.94136.58323.4198.9748.294



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35402813362e-241102 - 116110060 / 60minus ABC12798 ABC32852
MLOCMLOC_56412.17339e-22324 - 37810055 / 55minus ABC32852
JLOC1JLOC1_36478.17525e-22355 - 40910055 / 55minus
Harvest21ABC401935423e-25207 - 26610060 / 60plus
Harvest21ABC328524742e-22212 - 26610055 / 55minusABC32852
Harvest21ABC0994014412e-221149 - 120310055 / 55minus
Harvest35U35_328966922e-22267 - 32110055 / 55minus
Harvest35U35_1436415032e-221187 - 124110055 / 55minus
Harvest35U35_143625423e-25277 - 33610060 / 60minus



Contig Sequence (692 bp)

>U35_32896 692 Hv_44K_v2
TCCGGGCTCTACACATACCAGTGTGGAGGGGGTCTTTGCTGCTGGAGACGTGCAGGATAA
GAAGTATCGTCAGGCCATTACTGCTGCTGGATCAGGTTGCATGGCTGCTTTGGACGCCGA
GCACTATCTGCAGGAGGTGGGTGCACAGGTGGGCAAGTCTGATTGACTCTTTTCTGGTCA
AGCGACGGTCATCAGCTCGCCGAAAGCCGCACTCTGAGCTTGATGAGGTTGGTTGTCCAA
TTCTTCAACTGTTTCATTATGCGGCGAGCCGCACTCTGAGCTTGATGAGGTTGGTTGTCC
AATTCTTCAACTGTTTCATTATGCTGCTTTGCAGCACCGCATTATTCTCCTGTCATTAGG
CCCTAGATGAACTTCCATTGGTGCTGGAAATGATTTATATTTATCATTGGTGGAACTCAA
ACTGATTCTTATGTATCATTGGGGAAATCACATTATTATTCTGAGATATCTGTATTGCTC
CAGCGGCCGCTGGGGGCGGACTGGGGTCTTGGATGGGCTCACCCTGACAGGAAGCGAGCC
AAGAAGCATGCCACTGCAGTTCAGGGCCAAAATTGCTCCTTCTGCCTCAACAAACTCAAC
AAATGCAATGCACGTGGCATGCACGTAATCACCAAGCAGCCTCAGTCGAGCAACCTCCCC
ACAAATTCCCTCAAAGAAATTCTTCACAACAT



Homology of Contig U35_32896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None