- Probe CUST_17135_PI390587928
- Source Contig U35_44874
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17135_PI390587928 | Hv_44K_v2 | TTGCTGTGTACTGTAATGTGTTGTTGTTGATGGTGGTGGTGGCCGAATTCGCAATCATAG | 34 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.203 | 1.042 | 1.299 | 0.827 | 0.688 | 0.783 |
| Raw | 3158.910 | 3935.583 | 4621.823 | 4114.067 | 1309.503 | 1680.363 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59883.1 | 536 | 2e-24 | 476 - 535 | 100 | 60 / 60 | plus | ABC43099 |
| JLOC1 | JLOC1_39003.1 | 591 | 8e-25 | 478 - 537 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43099 | 593 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | ABC43099 |
| Harvest35 | U35_44874 | 593 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus |
Contig Sequence (593 bp)
>U35_44874 593 Hv_44K_v2 TTTTTTTTTTTTTTTGCAACAAATTGCAGCGAGCCTATGATTGCGAATTCGGCCACCACC ACCATCAACAACAACACATTACAGTACACAGCAACAGCAAGATCCTCAAAACCCACCTGC AAAGATACGTACTTTGCATCATACCTGAATATACTACTACCACTACTACACCGAACACCA CACTGCTAGCTCAAACTTTCTCTTTTGTCCCAACCCAACACTGAGATGCAAGAGGCACCA ACCTTAATCTCACTAAAAACATGAGTTAAAACCGGTAATTTGTAGACAATGCTCCTCTTC CGGCGTCGAGCTGTTGACCTTGAATCTAGCAAGTGGCGACCATCTGATGAGATGAACTTG GGCTACAGGCCATGCGTCGTCGGCCGCATCAGCTGCTGACTTCGGCGATGCTGTGCAGAG AAAGGCGCCACTGGCGGTGCCTCGACGTTTTTGTCGAGCTGCTCGGGTGGCCGTCCCTGT CCTGGCGCTCCAACTGATCGAGACCATCGTCCATGAGGGACTGGTCATCGCCGGCGGAGG CCGGCCTCCCGCCGGCCGGCTGGCTCTGGCGCTGCGCCCTCCTGGTCTTCTCC
Homology of Contig U35_44874 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |