barSeed - Barley Seed Development Database

Probe CUST_17132_PI390587928

Source Contig U35_44880

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17132_PI390587928	Hv_44K_v2	GGGAATCTCCATCGTTTTATCCCTGGATTCGTCTTAAATCGCTTGCTCTGCTGTGAAATG	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7310.1	1110	7e-23	285 - 344	98	59 / 60	minus	ABC00434
JLOC1	JLOC1_4819.1	976	4e-23	153 - 212	98	59 / 60	minus
Harvest21	ABC43109	590	3e-25	531 - 590	100	60 / 60	plus
Harvest35	U35_44880	590	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_44880 590 Hv_44K_v2
AACCAAGCTTCGAGGATGTCAGGCGACGGCGACGGCAAGGGCGAGAAGTTGCTGCTGGGC
GAGGGCGAGAAGGTGGTGGGCGAGGGCGAGAAGGTTCTGGGCAAGCGCGGCGCCAAGGGC
GGGAAGGGCCGGGGCAAGGGAGGCGCCAAGCGGCACCGGAAGGTGGTGCGGGACCACCTG
AACGGCATCACCAAGCCGGCCATCCGCCGTCTCGCCCGCCGTGGAGGCGTGAAGCGCATC
TCGGGGCAAATCTACGAGGAGGCCCGCCATGTGCTCAAGGTGTTCCTGGAGGCCACCGTC
CGCGACGCCCTCACCTGCAGCGAGCACTCCCGCCGCAAGACCGTCACCGGCAAGGACGTC
GTCTACTACTAGGCCGCGCCGATCCGGTCCGGCCGAACCCGCCTCGCGCCTCCTCCATAT
TAGCAGTAGCAGTTAGCTTCGGCGTAGATCATGGAATGCAGTAGTAGTACTAGCTAGTAG
CATGGCTTTTCTCTCTGTTGTTAGGATGTGGTACTAGTAGAGCATGGAATGGGAATCTCC
ATCGTTTTATCCCTGGATTCGTCTTAAATCGCTTGCTCTGCTGTGAAATG

Homology of Contig U35_44880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None