barSeed - Barley Seed Development Database

Probe CUST_17131_PI390587928

Source Contig U35_44882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17131_PI390587928	Hv_44K_v2	ATCTTTAGATGATGGTGGCATGTTTCCTATGTTCTCTGTCCATATCCTACTATTTGCAGC	547	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12967.3	1323	2e-24	1058 - 1117	100	60 / 60	plus	ABC24516 ABC43113
MLOC	MLOC_12967.4	785	2e-24	603 - 662	100	60 / 60	plus	ABC24516
MLOC	MLOC_12967.1	2096	2e-24	1170 - 1229	100	60 / 60	plus	ABC24516 ABC43113
JLOC1	JLOC1_8742.2	1726	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC43112	610	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_44882	610	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_44882 610 Hv_44K_v2
GACACCTCCTTCCCCGTCTTCGTCCAAGCTAGGGTTTCCTCTGCTGACCCCCGGTCGTGC
TTCCGGCCGCTACTTGCATCTCTCCGCCCTCCATTCTTTCCACTCCTCGAGCCTATGTGA
TATGGCGAGCACAACATGCTTCGTGATCGTTAGTAAGAATGATATCCCAATCTATGATGC
TGAAGTTGGATCAGCTCCAAAAAAAGAAGATCAGGCTTACCAGCATCAGTTCATTTTGCA
TGCTGCATTAGATGTTGTTCAGGATCTTGCATGGGCTACAAGTGCGATGTTTCTGAAGTC
AGTAGATAGATTCAACGATCTTGTGGTGTCTGTTTATGTAACTGCTGGTCATACTAGATT
TATGTTGCTTCATGATTCACGGAGTGAAGATGGTATAAAGAGCTTCTTTCAGGAAGTTCA
CGAACTTTATATCAAGGTAAACTGCTAGCTGTGTAGTGAGAAGGCTACATTTATTCTGAT
TGCTATTCTAAACTAAGTTAGAAGTTCATATAATATGAAGAAAAAAAAATACACGCATTG
AAGTGACATCTTTAGATGATGGTGGCATGTTTCCTATGTTCTCTGTCCATATCCTACTAT
TTGCAGCTGG

Homology of Contig U35_44882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40000.1	136	5e-66	protein\|trafficking protein particle complex subunit, putative, expressed
Brachypodium v1_2	Bradi3g48660.1	136	2e-65
Arabidopsis v10	AT1G80500.1	135	3e-60	SNARE-like superfamily protein \| chr1:30271195-30272431 FORWARD LENGTH=135