barSeed - Barley Seed Development Database

Probe CUST_17130_PI390587928

Source Contig U35_44883

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17130_PI390587928	Hv_44K_v2	ATTTCTGCATGTTTTACTGCGCAGATATTCTTTAATCCACTCTACTTACCTGGTTCTCGC	431	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.629	1.046	1.086	1.688	0.869	19.587
Raw	3.525	11.884	12.184	27.143	3.890	139.872

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12967.7	876	7e-23	32 - 91	98	59 / 60	plus	ABC24516 ABC43113
MLOC	MLOC_12967.1	2096	7e-23	1429 - 1488	98	59 / 60	plus	ABC24516 ABC43113
JLOC1	JLOC1_8742.2	1726	4e-23	868 - 927	98	59 / 60	plus
Harvest21	ABC43113	627	3e-25	432 - 491	100	60 / 60	minus	ABC43113
Harvest35	U35_44883	627	3e-25	432 - 491	100	60 / 60	minus

Contig Sequence (627 bp)

>U35_44883 627 Hv_44K_v2
TTTTTTTTTTTTTTTTACACATATAATGGTGCAGTATCGATGTGCAAGGTAAATTTCACA
AGACACCAGTATCTTACACAACAGCACAGGACAGGAGTAAGGAGATAAACAGAAAGCTGA
AACGCTGGCAGGGGCCAAGGTCTTTCTATAAATTTGCCACGCACAATATACAGTAGGCTA
GGGGGAAATACCTCAGAAATAAGCAAAGAAAGCTCTCCATTGAGCAGCATTTTGGCGCAT
CACAGTACTAGCTCATTTTCAGGATCTATTTTGGCCATTGAATAGTCGGAAGTAGGCAGA
CCAAAGAGAGGGTCACCAAAAAACTTTGTTATGTGGAGCTCACAAGGTCTTCCACCTGAG
TGTATGCTGCACTGCTACAGGTATTTCCTTGCAAGAGCCCTGACTTTGGTATTGAAATGG
GAGGATGTGATGCGAGAACCAGGTAAGTAGAGTGGATTAAAGAATATCTGCGCAGTAAAA
CATGCAGAAATATAAGCAGAAATCTAGCACGACTGCACAAGCAAGAAGAATGCTGGAATG
CATGACAACATCCTGATCCTTGTGCAGCTTATGCAATACGGAATGAAGTCATTAACAGAA
ATAGATAACGGACGATACCAAGTGATA

Homology of Contig U35_44883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None