- Probe CUST_17126_PI390587928
- Source Contig U35_44891
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17126_PI390587928 | Hv_44K_v2 | GCACGCTGGCATTTTTCTTGTATATGGACCGGTTGATTTTACACCCAATCTCCATTGCCT | 409 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.771 | 1.461 | 1.770 | 1.813 | 0.834 | 0.521 |
| Raw | 8.837 | 28.026 | 28.812 | 47.019 | 6.830 | 3.280 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13072.1 | 1988 | 2e-24 | 946 - 1005 | 100 | 60 / 60 | minus | ABC43129 |
| MLOC | MLOC_13072.2 | 2012 | 2e-24 | 944 - 1003 | 100 | 60 / 60 | minus | ABC43129 |
| JLOC1 | JLOC1_8813.1 | 2044 | 8e-25 | 997 - 1056 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43128 | 469 | 3e-25 | 410 - 469 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44891 | 469 | 3e-25 | 410 - 469 | 100 | 60 / 60 | plus |
Contig Sequence (469 bp)
>U35_44891 469 Hv_44K_v2 TCCACTTAGGGTTTCTTGGCATTGCATTGCCAACCTCCGCCATATCCTCTCGGCTCACCG ATCTTTGCCTGAATAGCTTCCAGGTACAGGGTCCGTGCGTGCTGGGTGACGTTGTATCCT CGGCTTGCTCCCCATGCTTGAAAAGGCTCGCCATCAACGATGCTCGAGGCATCGATAAAT TCACCATCCGCTCAGAGTCTCTAATGCAATTGAAGCTGAATGATCTAGATGGCCTGCAGC AGCTCACTGTCGTGACACCGACGCTCAAAGAGCTAAGTGTGATCCTTTGCTTTGGTCCCA ATCAACCTATTGCTAGCATCTCAGCGCCTCAGCTGATGTCGCTCCAGTGGAATGATGCTT ATGATCCATGCTCTGTCCAAATTGGCGAGATGGCACATCTACAATGTCTGCACGCTGGCA TTTTTCTTGTATATGGACCGGTTGATTTTACACCCAATCTCCATTGCCT
Homology of Contig U35_44891 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |