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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17125_PI390587928Hv_44K_v2ATGGCGATTTCTGCTATGAATTTCTGTTATTGTAATGGTACCTGGGATTGGAAGTTTTTT25GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3101.5151.1750.9750.4340.475
Raw 477.619878.871589.759758.800122.016142.708



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_13072.119883e-2281 - 13610056 / 56minus ABC43129
MLOCMLOC_13072.220123e-2281 - 13610056 / 56minus ABC43129
JLOC1JLOC1_8813.120441e-221864 - 191910056 / 56plus
Harvest21ABC431296633e-2526 - 8510060 / 60minusABC43129
Harvest35U35_448926633e-2526 - 8510060 / 60minus



Contig Sequence (663 bp)

>U35_44892 663 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCGAAAGAAAAAACTTCCAATCCCAGGTACCATTACAATAAC
AGAAATTCATAGCAGAAATCGCCATGAGACTACTAAATAGCAGTGCACCCCACTTAACAG
ATGCTCTCAGCATTGTTAGGAATCAGGGTAAGCTGCTAATATTCTAGCAAATTAATTAGC
ATCCATAGTTTCATACAGATTATTGAGATAAACATGCACCCCAGAAAGGCAATCCCAACA
ACATTGACATATTCTGGCAACATGAGTTCGTCACCACTCCTGAACATGCTTACATTAGGA
CCAAGCAAACTAGAAGCTTGTGAAGAGAATTGGCAAATCAGTGTGTTAATCTTCAGGAAC
ATACCGAACTTTCCCCACCAAGCAGCGGTGCACATAAAATTCCATATATAGTTCCGATGT
GGAGAAGCTTCGTAACATCTGGCACAACCCCTTGGCCTTTCTTTCCGTAATTGAGTGATG
AAAAGATACTGTCATCTTTTTTAAGGCCGTTGACCAACTGAATAACAGTTGCACAAAATC
ACGTTCATGTTCAGTTCCTGATAGTTCACTAATTTCTACTTCTTGGAGGCCATCGAGCAC
AAGTTTCTCTGTTTTCCAGTGTGTTGGCTGATCACAAATGCAACTCGATGGGCATGGAGT
CTG



Homology of Contig U35_44892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None