barSeed - Barley Seed Development Database

Probe CUST_17121_PI390587928

Source Contig U35_44897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17121_PI390587928	Hv_44K_v2	CGCAATCCGGCCCCGTTGCCGCTGCCGTTGCCGGAGATTGCGGTGCCGCCGGTGCAGCCG	111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370061	1205	2e-24	197 - 256	100	60 / 60	plus	ABC06664
MLOC	MLOC_17084.2	491	2e-24	248 - 307	100	60 / 60	minus	ABC06664
JLOC1	JLOC1_11800.1	741	8e-25	261 - 320	100	60 / 60	plus
Harvest21	ABC06664	1255	8e-21	202 - 253	100	52 / 52	plus	ABC06664
Harvest35	U35_44897	364	3e-25	112 - 171	100	60 / 60	plus
Harvest35	U35_16608	1255	8e-21	202 - 253	100	52 / 52	plus

Contig Sequence (364 bp)

>U35_44897 364 Hv_44K_v2
ATTCTTTCTCCATAGCAGCCGACGCTGCTCATGCCCGAGCCCCACCAAATCCACCAACCC
CCGCCCCCAACCGATCCAAACCCTGTTGCCTCCACGGCTGCAAATGCCCGGCGCAATCCG
GCCCCGTTGCCGCTGCCGTTGCCGGAGATTGCGGTGCCGCCGGTGCAGCCGAAGATGATC
ATAAAGGGGATGCTGGGCCGGTACGAGCGGTGGAACCCTGTGCACCCGACGGCGGGCGCC
TTCTGGGGCGTCGGGCTGGGGTTCGGCTGCGGCGTCNGGTGGGGCCCGGGGTTTGGACCC
GAGGTCATCGGCTACGTCGGCGCCGGATGCGGCGTCGGATTCAGCGTCGGCATCACGCTC
GCCG

Homology of Contig U35_44897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None