barSeed - Barley Seed Development Database

Probe CUST_17118_PI390587928

Source Contig U35_3801

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17118_PI390587928	Hv_44K_v2	CGTGCGTGCTGCTTCTACTACTGCCACGTGAACGAATTTGTTCATGGTTGCCCCTTTTTT	826	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.719	2.117	1.318	0.646	0.282	0.339
Raw	1127.652	2292.868	1208.813	968.974	139.779	185.595

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376053	2060	2e-24	1900 - 1959	100	60 / 60	plus	ABC11988
MLOC	MLOC_14642.1	367	2e-24	123 - 182	100	60 / 60	minus	ABC11988
Harvest21	ABC11988	991	3e-25	827 - 886	100	60 / 60	plus	ABC11988
Harvest35	U35_3801	991	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (991 bp)

>U35_3801 991 Hv_44K_v2
GCCCTCCTCCTCCCGCTGCAGTTCGGGGACTCGGAGCAGCCGGCGGTCACCGCGCCGCTC
ATCCGCAGCCCGCGCACCAACACCTTCTACTACGTGGCGCTCTCCGGCATCTCCGTGGGG
GGCGAGGCGCTGTCCATCCCATCCTCAGCCTTCGCCATGGACGACGCGGGATCCGGCGGC
GTCATCGTGGACTCCGGCACGGCGGTCACCCGGCTCCAGTCCGGCGCATACGGCGCGCTC
CGGGAGGCATTCGTCCAGGGCACGCAGTCCCTGCCCAGGGCCTCCGGCGTGTCCCTCTTC
GACACATGCTACGACCTCGCCGGGCGGTCCAGCGTGCAGGTGCCGGCGGTGGCGCTGCGG
TTCGAGGGAGGCGGGGAGCTGAAGCTGCCGGCGAAGAACTACCTGATCCCGGTGGACGCG
GCGGGGACCTACTGCCTGGCGTTCGCGGGGACGAGCGGGCCCGTGTCCATCATCGGCAAC
GTGCAGCAGCAGGGCGTGCGCGTCAGCTTCGACACCGCCAAGAACACCGTCGGCTTCACC
GCCGACAAGTGCTAGTGGGGGCGAGCTTAGCACTAATGGATTACGAGCGTGCATGTGGTA
ATTAAGCGGGGGTGGTGTGAGGGGCTTTGGGAAAGGCAAAGGCCGAGGACGGGAACTAAT
GCCAGCCTGTGCTTGCTTTGGCGGTGATGGATGGGGTAGCCATGGCCCATGGATGGTTTG
GTCTAGCGTCCTTCTGGTCTGGTCGTCGTCTAGCTCTGTGCGTGTAACTGTGTCGAGAAA
CACTGTGTCGATTGGCTCGAGCTCGCCGTCGCCATGGATGTGTGTGCGTGCGTGCTGCTT
CTACTACTGCCACGTGAACGAATTTGTTCATGGTTGCCCCTTTTTTTTTCAACAAAAGAA
AAAGATTGTTGTTGCACTTTAAAAAAAAAAAATGGAGCAGTAGAAATTGTTACTACCAAA
AAAAAAAAAAAAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_3801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04710.1	505	6e-93	protein\|aspartic proteinase, putative, expressed
Brachypodium v1_2	Bradi2g02660.1	530	4e-97
Arabidopsis v10	AT1G25510.1	483	2e-68	Eukaryotic aspartyl protease family protein \| chr1:8959372-8960823 REVERSE LENGTH=483