barSeed - Barley Seed Development Database

Probe CUST_17117_PI390587928

Source Contig U35_3802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17117_PI390587928	Hv_44K_v2	GTATGACAAACGTGTTGCCCCTGAAATGAACACCTCATTCAGATGGTACTTTGTAAAAAA	1909	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59692.1	5355	7e-23	2063 - 2119	100	57 / 57	minus	ABC10725 ABC30770
MLOC	MLOC_59693.1	2388	7e-23	389 - 445	100	57 / 57	minus	ABC10725 ABC30770
MLOC	MLOC_59692.2	4697	7e-23	1488 - 1544	100	57 / 57	minus	ABC10725 ABC30770
JLOC1	JLOC1_38861.3	5245	4e-23	3145 - 3201	100	57 / 57	plus
JLOC1	JLOC1_38861.2	4127	4e-23	2027 - 2083	100	57 / 57	plus
JLOC1	JLOC1_38861.1	4031	4e-23	1931 - 1987	100	57 / 57	plus
JLOC1	JLOC1_38860.2	4674	4e-23	1470 - 1526	100	57 / 57	minus
JLOC1	JLOC1_38860.1	4692	4e-23	1488 - 1544	100	57 / 57	minus
Harvest21	ABC30770	405	3e-25	335 - 394	100	60 / 60	plus	ABC30770
Harvest35	U35_3802	1980	3e-25	1910 - 1969	100	60 / 60	plus

Contig Sequence (1980 bp)

>U35_3802 1980 Hv_44K_v2
GGCCGCCGCTGAAAAAATTCCCCTCCCCTCCCCGTGAAACCCTAGCCGCCACACAAGAGC
CAAATCCCGCCCGCCGAGATCCGTTCCGTCGGATTTCCTCCCGCGAATCGAAGTTTCCCC
GTCGATTCGCGGTCGATCTTAGGGCGGGGCCTCTCGCCGTCGCTCTCGCGTCGCGGGATT
CACACCGGCCGACGACATGTCGAGGTGCTTCCCCTACCCGCCGCCGGGCTACGTGCGAAA
CCCAGTGGCCGTGCCCCCCGTTGCCGTGGTGGAGACGACCGCTAAGCTCCAGAAAGAAAG
GGAAAGGGCCGAAAAGAAGAAAGAGAAAAGGAATGACAAGAAAGCTTCCCATCGGGGTGG
CGATGAGACAAAACATTCAAAACGTAGTCATAAGAAGAGAAAGCATGAAGATACCAACCT
AGCTGGCTCAGAGTCCAAAACTGCCTCCAAAGAACTATTTGAGCAGTTGGAGAAGAGTGG
ACTCTCCGAAGAGCATGGAGCTCCTTCTTTCATTCAGACAGTACATGGATCACCAGAGAG
CTCTCAGGACAGCAGTAAGCGAAGAAAGGTGGTACTCCCAGGCCCTAGTCAAAATAAGAA
TGGGACATTCCTTCGCATTAAGATCAAAAGAGATCAGGATTCTCCGTCAGCAACGTTGGA
TAGGTCAAGGGTTCTTCAGCAACCACCTGTCCAACAAATTGCTACACCTTCATCCTTGTT
GAGTAAGCAGAATGCAGTTCAACCTCGCAGGGATGTTACGGCAAAGTCGGCTGCAAGTCT
CCAGCAAAGCATCAAGAGGGATTCTCAAGCTGTTCCAAAACAAATGGATGTAAAACCCCC
TGCAACGATCTTGCCAAGAGTTTCTTCCATGACAAATATTGCCCAAAAGGTGGATCTCCC
AATCTCTGCGAAAATCACGCAAAAGATAGATCCCCCAACCTCAGCGAAGATCATGCAGAA
GATGGAACCCCGGCTGTCTGTTAATGCCACACCTTCATCTGCTAAGGTGAGGGGAAGTGC
TGATCCTTTGCCTACACAGCTGACACGACAAGTTGTTCCTCCACCTGTCAAGGCTGCACA
GAGAGTCACTCCTGCCAAGGTTATTGACACTCCTCCCGTGAAGGCGTTGCAAAAGGTTGA
TCCTTTGGTGCCATCCAAGGTGCTCAGAAGAGATGCTCCTCCACCTAGTTTGCCGGTTTT
GCAGAAGGAAACAGTAAAAGTTGCTGCTTCCCACCAGCCAGACAGGCAGCAGCAGCCCGT
TCTGCACAAACCAAAGGCGCCTGTAGGCACTCCCCTCATCAAAGAGCAGCAGGCAAGCAC
CTTGCCCAAAGAAGAGCCTTGTTCCTCTGGCAGGAACACTGAAAAAGTTAAGCAGTCGAA
GTCTGATCGTAAGAAGAGCCGCAAGGCTGAGAAGGAAGAGAAGAAAGAGAGGAAGTTCCG
AGATCTATTTGTCACCTGGAATCCACCTTCCTTGGAGATTGTAGATACTGTGGATCTCGG
CGATCAGGAGGATTGGTTGCTTGGGGGTGGAAAGAAACCTGATGCCAGCATCAGCAGCAG
CTGCAAGGCAAGTGACGGTTTGGCACCCATGGAGCTGGAGTTTTCATGGCAACCAAGGGC
CATTCATTTGCCTGACCTTCATCTCTATCAGTTGCCATATGTTGTTCCTTTTTAGGTTTG
TGTAGGAAGACTCGAGGTAGAGGGGAAGTAGGAGATGTTGGGAGAATAGCTGTGCCGGTG
TGGGAGATAGTGCTACCCCCCACCGGCAGTTTTCCAGCTTTGTTTCCAGGATTTTTGTTG
TTTCATCAGGACGATGACTGTGGGAACCTTCTGTGGTGTTGTTAATCCATTTGACTTAAT
TTTTTGTTTCCAAGCGGACAAAAAAAAATTTGAAGGTTATTGTAATGTTGTATGACAAAC
GTGTTGCCCCTGAAATGAACACCTCATTCAGATGGTACTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13810.1	448	2e-98	protein\|expressed protein
Brachypodium v1_2	Bradi1g68500.1	457	1e-109
Arabidopsis v10	None