barSeed - Barley Seed Development Database

Probe CUST_17113_PI390587928

Source Contig U35_3806

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17113_PI390587928	Hv_44K_v2	ATACTGAGTACCTGAAACTGGTAGTAGAAAGCACCGCTAGATTACCATTTCTTCTTTAAA	1359	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.852	1.359	1.122	0.995	0.379	0.424
Raw	103.860	248.707	181.397	257.095	34.589	41.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08671	1221	3e-25	1148 - 1207	100	60 / 60	plus	ABC08671
Harvest35	U35_3806	1433	3e-25	1360 - 1419	100	60 / 60	plus

Contig Sequence (1433 bp)

>U35_3806 1433 Hv_44K_v2
GAAATTCTCGCCTGTTTACCCACACAGCCAGCGGCAGGCGACGCACCCGAAGCAGAGCGC
GCAGGCTACCCCAAAACCACCGGATAATCAATCCCTTGCGCGGGCCACGAGCGCCAGAGA
AGCAGCGGTGGCGATGGAGCCGGAGGGGGTACGGCACCGGATGGTGGAGGTGGCGAAGGG
GCTGCGGCTGCACGTGGCGGAGGCGGGGCCCGAGGACGGCCCCGCGGTGCTGCTCGTGCA
CGGCTTCCCGGACCTCTGGTACGGCTGGCGCCACCAGATGGCTGCCCTGGCGGCCCGGGG
CTTCCGCGCCGTCGCGCCCGACATGCGCGGCTACGGCGACTCCGACGCCCCGCCCTCCGC
GGCCTCCTACACCACCTTCCACCTCGTCGGCGACCTCGTCGCCCTCATCGCCGACCTCGC
CCAGCCACAGGTATTCGTGGTTGGGCACGACTGGGGCGCACTCGTGGCATGGCATCTCTG
CCTGCTCCGGCCGGATCTTGTGCGGGCGCTCGTTAACCTCAGCGTGGCGTACCACCCGCG
CAGCTCCGAGGGGAGCCCGCTCCAGGCCATCAGGGCCTTGTGCGGGGAAGACCACTACAT
GTGCCGTTTCCAGGAGCCCGGAGTCGCTGAAGCTGAATTTGCTCTATACGACATGAGTCA
TAAGTTTAAGACGGTCTTTGGAATGCGCAAACCAGCTCCTCCTATTCTACCCAAGGACAA
GACCTTCTTTGACTCACTTGATTCGGATGGTACTTGTCCTCCATGGTTGTCTGAAGAAGA
TATTTCCTACTACGCAGACAAATTTGAGAAGACAGGGTTTACAGGAGGGCTTAACTACTA
CAGATGCATGGACTTGAACTGGGAGCTTTCTGCGCCATGGACCGGAGCTCCAGTAAAAGT
AGCAACAAAATTCATCGTTGGGGACCTGGACGTGACATACAACGTGCCGGGGGTGAAAGA
CTACATTCACAAGGGTGGCCTCAAAGCGAACGTGCCTAATCTGGAGGATGTGGTTGTCAT
GGAGGGAGTGAGCCACTTCTGCAACCAGGAGAAGCCTAATGAGGTTTCAGATCACATCTG
CGAGTTCTTCAGCAAGTTCTGATTATATAAAGAGAGTCTCGGCGAACCTACTTGTTTTAG
TGTTGTTTGTGTAGTTATAACTTGCCGATTACACATGCCATGATACCGAATTTTCTCTAA
ATAAAATCATGGTTTGATTTTCACAGCAAAATTTCTGTGAACTCTCAGGTCGTACTGTTT
CTGTGAAGAGGATCAAAATGTAACCTGTGGGCAGCAGTGAAATCTTAGTACTCCCTCCGA
CCCATATTTACTGTAGCAACTTTAGTACTGTGCATTTTTATACTGAGTACCTGAAACTGG
TAGTAGAAAGCACCGCTAGATTACCATTTCTTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3806 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15130.1	325	3e-180	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi2g09130.1	323	0.0
Arabidopsis v10	AT4G02340.1	324	4e-129	alpha/beta-Hydrolases superfamily protein \| chr4:1035722-1037403 FORWARD LENGTH=324