barSeed - Barley Seed Development Database

Probe CUST_17110_PI390587928

Source Contig U35_3809

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17110_PI390587928	Hv_44K_v2	CGTTTCTATAATTGGATAGAGCAATGGCCTGTGAAAAACCCGGCATGTTGCTACAAAAAA	2214	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.254	1.380	1.160	0.918	0.392	0.437
Raw	836.176	1459.203	1059.631	1331.303	195.900	236.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3809	2285	3e-25	2215 - 2274	100	60 / 60	plus

Contig Sequence (2285 bp)

>U35_3809 2285 Hv_44K_v2
CGGCGGATCAAGTACGGTTCAGTACCGGCCTTCGCGCTGGTGCAGAGCAGGAAGAACGCC
CTCGCAGATGCTGCTGCTATGCAGCACATGCACTCGGTCTCAGAGCACGCGGAATGGTGG
CAATATGTGCTCGAATACAGCAAAACCATCGGTAATCTTCTTGGCAATCCAGATTCTCTT
CCTGCTTTCATGATTGAAGACCCGAGGGCAATTCTTAAGGTTAGAGAGAAGCCTACTAGT
TTAAAGGCTGCCTGGGAATTGTTGGAGATATTCTATGTTGACAAAGAGTTACACAGCTGG
CTTCCGGAGCGACTCGTTGATTGGTTAGCTGATTACGACAGCCTCTTGACCAAGACGGAT
GGCACGGTGTATTGCAAGCTCAATAATTTCCAAAAAAAGCTAATCAACCTGCAGATTGTT
GAAAATGATGATGATTACTGGAATGGATTATCGGCAGCACTGTCAGTTGGATGGCTTGAT
GTCGTGGTGAATATGCTACGTTTTCATGGATCATACCAGTTGGATCAGATGGACAACCGT
GAGACAGAAAACGGGTTGGTTGAGGCTGTTGCAGTTCTTGTCTCAACCATGCCGCGCATG
AGACCGGATTTACCAAAGGGTAAATTAGGCCAGTGCTGTAAAACAAGACCTGATTTCATC
AAGACATGGGAAAAATGGCGAGGTCAAGTAAGTAAACTGGAGTGCAGTGCATTTTGGATT
CAGTGCAGTCACCAAAAAACTCGTGATGGTTTGAAGAATCTGCTTCACATCATGTTGGGA
AATATAAAGGACCTCACTGCTGCTACTTCCCATTGGCTGGAACTATTCGCTTCTCATTTT
CTTTATATAAGACCATTTACGGTGGGCTTTGAAGGGATGCATCACTTAGCACAGAAATGC
ATACAACTTAAGCCGTCTTTCGACACTAATGGATTAACAGGCCTCCTTAATGGAATCCTA
TCAGAAAATCCAGAGGTTGTCTTGGCGGAATGCACAACAAAATTTGGACCTTGGATGGTT
GCACACGGTATGGAGCTGTTGGCAGCTGATAATGACTATGCAGATATTATGCTGCATGAA
GAGCGGCCTAACTTTGGTGGCATAAGCATAGAAGAACTGCACCGGCTAGTCTACGCTCAA
GTTCTGTGTTCTCATTCTTTAACTTGGCAGATCGCACCGACTTATCTGTCCTCGTGTCTA
AACCAAGGTCTAGGTCTGCTGGAGATTCTACTCCTCAAGCAACCCATACAAGATAACCGT
CTAGTGCTGAAGACTTTGGAACTTTGTCGTTTGTATGAACTGGAGGATGTTGGTACGAAC
ATCATGAAGATTGCAGGCATTTACCATTGGAAGCATGGTAGAAAAGGAACTGGGGTTTAC
TGGTTTCAGCAAGCTCATGATAAAGTACGACTTGATAGAATTGCTCAACAATTATTTGAA
CGCATTGGGAAGTCAGTTGCAGATGATAATTTTAAGCAATGGGAAGGGTTGCTCGAGCTA
CTAGGTTCAGACATTGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGGGATTTC
AAGAGATCCCTTCAACAGGCACTAGAAGGAAGAACCGGCGAGGCTGCTCGGCAGACCGTG
GAGTTTCTTATACAGCTAATGAGAAATCCTTCTACACCACAACGTTTCTGGCTGCCCCTT
CTACATGACTCAGTGAAACTACTTAACTGCAAACCCCACCCTTTATTGAATGTTGCCGAG
ACGACCTTGTTGCTCAATAAGCTACAAGAACTGTCAATGGCCAAGCTGCGTCCTGACTTC
TGCAGTAATCACCTACCAATCCATGCACTGAGCTCTGTCAGGTTGGCCCTGGGATCAAAC
CTCGCCCGTGCCATTCTTGAAGAAGCTTGAATGCTGTATCTGGTGGAGGATTGGCTCCAG
TTTGGTGGCGTTGCTCGGCAGTTACCAGGCTCAGTATTTTGTTGTTGTTGAGAAGAGTTT
GAATTCGTTTCGCTCTGGTTCAGCGGCTCTGCCATAGATGTACCATCTATTGTTTTTAGC
TTTGGTGATCTCAGCTGTCTGTCGTATTTTATACGAAGCGGGGTGCTCGTGACTGTATCA
TTGGGTAAAAAACCCGGCATGTTGCTAAAAATCTAGTGTACTCACAGTGAGCCTGTCGAA
AAAGAAAGTACAGTGCTTAGCCCGTTGTCACCGGGAGAATGTTCCTTCCTCCAACGTTTC
TATAATTGGATAGAGCAATGGCCTGTGAAAAACCCGGCATGTTGCTACAAAAAAAAAAAA
AAAAA

Homology of Contig U35_3809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g54240.1	734	protein\|nucleoporin, putative, expressed
Brachypodium v1_2	Bradi2g49627.1	731
Arabidopsis v10	AT4G32910.1	716	CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:15881364-15885210 FORWARD LENGTH=716